Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata ABI3VP1 Family

Description

Suzuki et al. 1997: When expressed and purified as a separate peptide, the B3 domain has a highly cooperative DNA binding activity that is specific for the Sph sequence. We find that the properties of this activity are in compelling agreement with the functional analyses of VP1 and regulatory sequences in the C7 promoter. These results identify a new class of DNA binding proteins, which thus far are known only in the plant kingdom, that have critical functions in development.

Members of this family
  SHOULD possess B3 domain
  SHOULD NOT possess AP2 Auxin_resp domains

Domain alignments

This family is also present in:

References

There are 73 gene models in this family



Gene modelDescriptionDomains
312638 fgenesh1_pm.C_scaffold_1001418 B3
314370 fgenesh1_pm.C_scaffold_1003150 B3
317478 fgenesh1_pm.C_scaffold_3000494 B3
317484 fgenesh1_pm.C_scaffold_3000500 B3
317904 fgenesh1_pm.C_scaffold_3000920 B3
318465 fgenesh1_pm.C_scaffold_3001481 B3
320274 fgenesh1_pm.C_scaffold_4000331 B3
323305 fgenesh1_pm.C_scaffold_5000849 B3
328561 fgenesh1_pm.C_scaffold_7000788 B3
330738 fgenesh1_pm.C_scaffold_8000081 B3
331130 fgenesh1_pm.C_scaffold_8000473 B3
332063 fgenesh1_pm.C_scaffold_8001406 B3
339541 fgenesh1_pg.C_scaffold_2001640 B3 DSPc
342636 fgenesh1_pg.C_scaffold_3002399 B3
344050 fgenesh1_pg.C_scaffold_4000392 B3
350906 fgenesh1_pg.C_scaffold_6001499 B3
353664 fgenesh1_pg.C_scaffold_7000837 B3
355494 fgenesh1_pg.C_scaffold_7002667 B3
470180 fgenesh2_kg.1__134__AT1G01030.1 B3
473040 fgenesh2_kg.1__2994__AT1G28300.1 B3
479415 fgenesh2_kg.3__2116__AT3G18990.1 B3
479433 fgenesh2_kg.3__2134__AT3G19184.1 B3
480792 fgenesh2_kg.3__3493__AT2G16210.1 B3
481325 fgenesh2_kg.4__385__AT2G24650.1 B3
482495 fgenesh2_kg.4__1555__AT2G35310.1 B3
483854 fgenesh2_kg.4__2914__AT2G46870.1 B3
484455 fgenesh2_kg.5__447__AT3G26790.1 B3
486704 fgenesh2_kg.5__2696__AT3G61970.1 B3
487432 fgenesh2_kg.6__566__AT5G06250.2 B3
488674 fgenesh2_kg.6__1808__AT5G18090.1 B3
489405 fgenesh2_kg.6__2539__AT5G25475.2 B3
491574 fgenesh2_kg.7__1007__AT4G31630.1 B3
491577 fgenesh2_kg.7__1010__AT4G31610.1 B3
493975 fgenesh2_kg.7__3408__AT4G03170.1 B3
496153 fgenesh2_kg.8__1969__AT5G60140.1 B3
496902 fgenesh2_kg.8__2718__AT5G66980.1 B3
497309 fgenesh2_kg.181__3__AT2G46870.1 B3
497432 fgenesh2_kg.457__2__AT2G35310.1 B3
856135 Al_scaffold_0022_1 B3
857250 Al_scaffold_0007_749 B3
859566 Al_scaffold_0007_3065 B3
861370 Al_scaffold_0006_879 B3
862948 Al_scaffold_0006_2457 B3
868325 Al_scaffold_0004_488 B3
874794 Al_scaffold_0003_3435 B3
886032 Al_scaffold_0008_2296 B3
890070 scaffold_102864.1 B3
891847 scaffold_104641.1 B3
897360 scaffold_301330.1 B3
898397 scaffold_302367.1 B3
901025 scaffold_400526.1 B3
901028 scaffold_400529.1 B3
901047 scaffold_400548.1 B3
901062 scaffold_400563.1 B3
901324 scaffold_400825.1 B3
901447 scaffold_400948.1 B3 DUF295
902034 scaffold_401535.1 B3 zf-CW
902720 scaffold_402221.1 B3
906718 scaffold_502422.1 B3
909450 scaffold_601507.1 B3
912083 scaffold_604140.1 B3
912952 scaffold_700694.1 B3
913118 scaffold_700860.1 B3 WD40
913255 scaffold_700997.1 B3 zf-CW
913296 scaffold_701038.1 B3
913297 scaffold_701039.1 B3
913300 scaffold_701042.1 B3 HRDC
914517 scaffold_702259.1 B3
916468 scaffold_704210.1 B3
916469 scaffold_704211.1 B3
918037 scaffold_801437.1 B3
919255 scaffold_802655.1 B3
919257 scaffold_802657.1 B3

General references

Nag, R; Maity, MK; Dasgupta, M. 2005. Dual DNA binding property of ABA insensitive 3 like factors targeted to promoters responsive to ABA and auxin. Plant Mol. Biol. 59(5):821-38 PUBMEDID:16270233
Suzuki, M; Kao, CY; McCarty, DR. 1997. The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity. Plant Cell 9(5):799-807 PUBMEDID:9165754