Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica ABI3VP1 Family

Description

Suzuki et al. 1997: When expressed and purified as a separate peptide, the B3 domain has a highly cooperative DNA binding activity that is specific for the Sph sequence. We find that the properties of this activity are in compelling agreement with the functional analyses of VP1 and regulatory sequences in the C7 promoter. These results identify a new class of DNA binding proteins, which thus far are known only in the plant kingdom, that have critical functions in development.

Members of this family
  SHOULD possess B3 domain
  SHOULD NOT possess AP2 Auxin_resp domains

Domain alignments

This family is also present in:

References

There are 65 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g13300.1 B3 DNA binding domain containing protein, expressed AT_hook B3
LOC_Os01g51610.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os01g52514.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os01g52540.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os01g67830.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os01g68370.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os01g68370.2 B3 DNA binding domain containing protein, expressed B3
LOC_Os01g68370.3 B3 DNA binding domain containing protein, expressed B3
LOC_Os01g68370.4 B3 DNA binding domain containing protein, expressed B3
LOC_Os02g25820.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os02g38470.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os02g45850.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g02900.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g06850.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g06850.2 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g06850.3 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g06850.4 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g06850.5 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g08620.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g11370.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g42230.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g42240.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g42250.1 B3 DNA binding domain containing protein B3
LOC_Os03g42280.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g42280.2 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g42290.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g42370.1 B3 DNA binding domain containing protein B3
LOC_Os03g42410.1 B3 DNA binding domain containing protein B3
LOC_Os03g42420.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os03g42430.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os04g27960.1 B3 DNA binding domain containing protein B3
LOC_Os04g27990.1 B3 DNA binding domain containing protein B3
LOC_Os04g28000.1 B3 DNA binding domain containing protein B3
LOC_Os04g49230.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os04g58000.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os04g58010.1 B3 DNA binding domain containing protein B3
LOC_Os05g40280.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os06g01860.1 hypothetical protein B3
LOC_Os06g02230.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os06g09420.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os06g42630.1 B3 DNA binding domain containing protein B3
LOC_Os07g08530.1 auxin response factor, putative, expressed B3
LOC_Os07g08540.1 auxin response factor 20, putative, expressed B3
LOC_Os07g08600.1 auxin response factor, putative B3
LOC_Os07g12820.1 B3 DNA binding domain containing protein B3
LOC_Os07g17230.1 disease resistance protein, putative, expressed B3 LRR_1 NB-ARC
LOC_Os07g37610.1 B3 DNA binding domain containing protein, putative, expressed B3 zf-CW
LOC_Os07g48200.1 B3 DNA binding domain containing protein, putative, expressed B3 zf-CW
LOC_Os07g48200.2 B3 DNA binding domain containing protein, putative, expressed B3 zf-CW
LOC_Os08g01090.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os08g01090.2 B3 DNA binding domain containing protein, expressed B3
LOC_Os08g06120.1 B3 DNA binding domain containing protein B3
LOC_Os08g23470.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os08g23570.1 B3 DNA binding domain containing protein B3
LOC_Os10g07060.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os10g17630.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os10g39190.1 B3 DNA binding domain containing protein B3
LOC_Os11g05740.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os11g09160.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os11g09160.2 B3 DNA binding domain containing protein, expressed B3
LOC_Os12g06080.1 hypothetical protein B3
LOC_Os12g40070.1 B3 DNA binding domain containing protein B3
LOC_Os12g40080.1 B3 DNA binding domain containing protein B3
LOC_Os12g40090.1 B3 DNA binding domain containing protein, expressed B3
LOC_Os12g40120.1 B3 DNA binding domain containing protein, expressed B3

General references

Nag, R; Maity, MK; Dasgupta, M. 2005. Dual DNA binding property of ABA insensitive 3 like factors targeted to promoters responsive to ABA and auxin. Plant Mol. Biol. 59(5):821-38 PUBMEDID:16270233
Suzuki, M; Kao, CY; McCarty, DR. 1997. The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity. Plant Cell 9(5):799-807 PUBMEDID:9165754

Specific references

Nakagawa, H; Ohkura, E; Ohmiya, K; Hattori, T. 1996. The seed-specific transcription factor VP1 (OSVP1) is expressed in rice suspension-cultured cells. Plant Cell Physiol. 37(3):355-62 PUBMEDID:8673344