Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa ABI3VP1 Family

Description

Suzuki et al. 1997: When expressed and purified as a separate peptide, the B3 domain has a highly cooperative DNA binding activity that is specific for the Sph sequence. We find that the properties of this activity are in compelling agreement with the functional analyses of VP1 and regulatory sequences in the C7 promoter. These results identify a new class of DNA binding proteins, which thus far are known only in the plant kingdom, that have critical functions in development.

Members of this family
  SHOULD possess B3 domain
  SHOULD NOT possess AP2 Auxin_resp domains

Domain alignments

This family is also present in:

References

There are 83 gene models in this family



Gene modelDescriptionDomains
174688 gw1.I.3288.1 B3
177016 gw1.I.5616.1 B3
197958 gw1.IV.3047.1 B3
201669 gw1.IX.2134.1 B3
209677 gw1.V.5078.1 B3
232868 gw1.XI.848.1 B3
234125 gw1.XI.2105.1 B3 zf-CW
240006 gw1.XIII.255.1 B3 zf-CW
240024 gw1.XIII.273.1 B3 zf-CW
245230 gw1.XIV.1973.1 B3
250249 gw1.XIX.2649.1 B3 zf-CW
256422 gw1.XVI.2361.1 B3
266519 gw1.124.169.1 B3
267709 gw1.130.31.1 B3
267711 gw1.130.33.1 B3
270412 gw1.1408.1.1 B3
286795 gw1.40.555.1 B3
408900 gw1.II.235.1 B3
409425 gw1.II.760.1 B3
412326 gw1.II.3661.1 B3
416341 gw1.VI.714.1 B3
416612 gw1.VI.985.1 B3 zf-CW
551891 eugene3.00021206 B3
551892 eugene3.00021207 B3
555506 eugene3.00040219 B3 zf-CW
557371 eugene3.00090631 B3
557372 eugene3.00090632 B3
569531 eugene3.00120184 B3
569532 eugene3.00120185 B3
569539 eugene3.00120192 B3
570206 eugene3.00120859 B3
572092 eugene3.00140137 B3
574763 eugene3.00150158 B3
574767 eugene3.00150162 B3
574768 eugene3.00150163 B3
574771 eugene3.00150166 B3
574773 eugene3.00150168 B3
574777 eugene3.00150172 B3
574779 eugene3.00150174 B3
577177 eugene3.00161312 B3 zf-CW
579013 eugene3.00181237 B3
579432 eugene3.01070018 B3
580545 eugene3.122450001 B3
580840 eugene3.12440001 B3
581504 eugene3.01300058 B3
581505 eugene3.01300059 B3
584479 eugene3.01630048 B3
584482 eugene3.01630051 B3
586151 eugene3.18970001 B3
591695 eugene3.00400040 B3
593334 eugene3.05020005 B3
593638 eugene3.55540001 B3
595684 eugene3.72070001 B3
597091 eugene3.00880041 B3
645618 grail3.0067000301 B3
649491 grail3.0001051501 B3
740362 estExt_Genewise1_v1.C_400705 B3
744205 estExt_Genewise1_v1.C_1300033 B3
755009 fgenesh4_pg.C_LG_II001189 B3
756479 fgenesh4_pg.C_LG_III000021 B3
760459 fgenesh4_pg.C_LG_V000511 B3
764087 fgenesh4_pg.C_LG_VII000432 B3
764626 fgenesh4_pg.C_LG_VII000971 B3
764628 fgenesh4_pg.C_LG_VII000973 B3
770235 fgenesh4_pg.C_LG_X001725 B3
772406 fgenesh4_pg.C_LG_XII000181 B3
772407 fgenesh4_pg.C_LG_XII000182 B3
772408 fgenesh4_pg.C_LG_XII000183 B3
772409 fgenesh4_pg.C_LG_XII000184 B3
775726 fgenesh4_pg.C_LG_XV000154 B3
775729 fgenesh4_pg.C_LG_XV000157 B3
775730 fgenesh4_pg.C_LG_XV000158 B3
775738 fgenesh4_pg.C_LG_XV000166 B3
779701 fgenesh4_pg.C_LG_XVIII001069 B3
781471 fgenesh4_pg.C_scaffold_40000221 B3
783236 fgenesh4_pg.C_scaffold_86000096 B3
784500 fgenesh4_pg.C_scaffold_130000008 B3
786140 fgenesh4_pg.C_scaffold_163000058 B3
791723 fgenesh4_pg.C_scaffold_2789000001 B3
792951 fgenesh4_pg.C_scaffold_5278000001 B3
795420 fgenesh4_pg.C_scaffold_17519000001 B3
819966 estExt_fgenesh4_pg.C_LG_VII0894 B3
828474 estExt_fgenesh4_pg.C_1630059 B3

General references

Nag, R; Maity, MK; Dasgupta, M. 2005. Dual DNA binding property of ABA insensitive 3 like factors targeted to promoters responsive to ABA and auxin. Plant Mol. Biol. 59(5):821-38 PUBMEDID:16270233
Suzuki, M; Kao, CY; McCarty, DR. 1997. The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity. Plant Cell 9(5):799-807 PUBMEDID:9165754