Plant Transcription factor database - Universität Potsdam
version: 3.0

Zea mays ARF Family

Description

Guilfoyle et al. 1998: Auxin response factors or ARFs are a recently discovered family of transcription factors that bind with specificity to auxin response elements (AuxREs) in promoters of primary or early auxin-responsive genes. ARFs have an amino-terminal DNA-binding domain related to the carboxyl-terminal DNA-binding domain in the maize transactivator VIVIPAROUS1. All but one ARF identified to date contain a carboxyl-terminal protein-protein interaction domain that forms a putative amphipathic alpha-helix. A similar carboxyl-terminal protein-protein interaction domain is found in the Aux/IAA class of auxin-inducible proteins. Some ARFs contain transcriptional activation domains, while others contain repression domains. ARFs appear to play a pivotal role in auxin-regulated gene expression of primary response genes.

Members of this family
  SHOULD possess Auxin_resp domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Remington et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 23 members for this family, 21 of which are present in ArabTFDB, giving a PPV of 0.95. Two additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.91.

This family is also present in:

References

There are 88 gene models in this family



Gene modelDescriptionDomains
GRMZM2G005284_P01 Auxin_resp B3
GRMZM2G006042_P01 Auxin_resp B3
GRMZM2G006042_P02 Auxin_resp B3
GRMZM2G006042_P03 Auxin_resp B3
GRMZM2G014864_P01 Auxin_resp B3
GRMZM2G017187_P02 Auxin_resp B3
GRMZM2G017187_P03 AUX_IAA Auxin_resp B3
GRMZM2G023813_P01 Auxin_resp B3
GRMZM2G028980_P01 Auxin_resp B3
GRMZM2G030710_P01 Auxin_resp B3
GRMZM2G033009_P01 AUX_IAA Auxin_resp B3
GRMZM2G033009_P02 AUX_IAA Auxin_resp B3
GRMZM2G034840_P01 AUX_IAA Auxin_resp B3
GRMZM2G035405_P02 Auxin_resp B3
GRMZM2G036626_P01 Auxin_resp B3
GRMZM2G052055_P01 Auxin_resp B3
GRMZM2G053143_P01 AUX_IAA Auxin_resp B3
GRMZM2G053143_P02 Auxin_resp B3
GRMZM2G053143_P03 Auxin_resp B3
GRMZM2G053143_P04 AUX_IAA Auxin_resp B3
GRMZM2G053143_P05 AUX_IAA Auxin_resp B3
GRMZM2G053143_P06 AUX_IAA Auxin_resp B3
GRMZM2G053143_P07 Auxin_resp B3
GRMZM2G056120_P01 Auxin_resp B3
GRMZM2G067471_P01 AUX_IAA Auxin_resp B3
GRMZM2G069908_P01 Auxin_resp B3
GRMZM2G071857_P01 Auxin_resp B3
GRMZM2G071857_P02 Auxin_resp B3
GRMZM2G071857_P03 Auxin_resp B3
GRMZM2G073750_P01 AUX_IAA Auxin_resp B3
GRMZM2G073750_P02 AUX_IAA Auxin_resp B3
GRMZM2G073750_P03 Auxin_resp B3
GRMZM2G075715_P01 Auxin_resp
GRMZM2G075811_P01 AUX_IAA Auxin_resp B3
GRMZM2G075811_P02 AUX_IAA Auxin_resp B3
GRMZM2G078274_P01 Auxin_resp B3
GRMZM2G078274_P03 Auxin_resp B3
GRMZM2G079114_P01 AUX_IAA Auxin_resp B3
GRMZM2G079114_P03 AUX_IAA Auxin_resp B3
GRMZM2G079114_P04 Auxin_resp B3
GRMZM2G079114_P05 Auxin_resp B3
GRMZM2G079114_P06 Auxin_resp B3
GRMZM2G081158_P01 Auxin_resp B3
GRMZM2G081406_P01 Auxin_resp B3
GRMZM2G085248_P01 Auxin_resp B3
GRMZM2G086949_P01 AUX_IAA Auxin_resp B3
GRMZM2G089640_P01 Auxin_resp
GRMZM2G093141_P01 Auxin_resp B3
GRMZM2G093141_P02 Auxin_resp B3
GRMZM2G100074_P01 Auxin_resp B3
GRMZM2G102845_P01 Auxin_resp B3
GRMZM2G108176_P01 AUX_IAA Auxin_resp B3
GRMZM2G108176_P02 AUX_IAA Auxin_resp B3
GRMZM2G108176_P03 AUX_IAA Auxin_resp B3
GRMZM2G115292_P01 Auxin_resp B3
GRMZM2G116557_P01 Auxin_resp B3
GRMZM2G116557_P02 Auxin_resp B3
GRMZM2G116557_P03 Auxin_resp B3
GRMZM2G125717_P01 Auxin_resp B3
GRMZM2G125717_P02 AUX_IAA Auxin_resp B3
GRMZM2G125717_P03 AUX_IAA Auxin_resp B3
GRMZM2G125717_P04 AUX_IAA Auxin_resp B3
GRMZM2G125717_P05 Auxin_resp B3
GRMZM2G125717_P06 Auxin_resp B3
GRMZM2G125717_P07 Auxin_resp B3
GRMZM2G134112_P02 Auxin_resp B3
GRMZM2G134112_P03 Auxin_resp B3
GRMZM2G134344_P01 Auxin_resp B3
GRMZM2G134344_P02 Auxin_resp B3
GRMZM2G137413_P01 Auxin_resp B3
GRMZM2G140881_P01 Auxin_resp B3
GRMZM2G140881_P02 Auxin_resp
GRMZM2G141423_P01 Auxin_resp B3
GRMZM2G151269_P01 Auxin_resp B3
GRMZM2G153233_P01 Auxin_resp B3
GRMZM2G153233_P02 Auxin_resp B3
GRMZM2G158491_P01 AUX_IAA Auxin_resp B3
GRMZM2G158491_P02 Auxin_resp B3
GRMZM2G159399_P01 Auxin_resp B3
GRMZM2G159399_P02 Auxin_resp B3
GRMZM2G160005_P01 Auxin_resp B3
GRMZM2G167205_P01 Auxin_resp B3
GRMZM2G169820_P01 Auxin_resp B3
GRMZM2G172960_P01 Auxin_resp B3
GRMZM2G172960_P02 Auxin_resp B3
GRMZM2G172960_P03 Auxin_resp B3
GRMZM2G175045_P01 Auxin_resp B3
GRMZM2G175045_P02 Auxin_resp B3

General references

Guilfoyle, TJ; Ulmasov, T; Hagen, G. 1998. The ARF family of transcription factors and their role in plant hormone-responsive transcription. Cell. Mol. Life Sci. 54(7):619-27 PUBMEDID:9711229
Ulmasov, T; Hagen, G; Guilfoyle, TJ. 1997. ARF1, a transcription factor that binds to auxin response elements. Science 276(5320):1865-8 PUBMEDID:9188533