Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 28 gene models in this family



Gene modelDescriptionDomains
323669 fgenesh1_pm.C_scaffold_5001213 GATA
329901 fgenesh1_pm.C_scaffold_7002128 GATA
356279 fgenesh1_pg.C_scaffold_8000066 GATA
470852 fgenesh2_kg.1__806__AT1G08010.1 GATA
477989 fgenesh2_kg.3__690__AT3G06740.1 GATA
479155 fgenesh2_kg.3__1856__AT3G16870.1 GATA
479637 fgenesh2_kg.3__2338__AT3G21175.1 CCT CCT_2 GATA tify
479930 fgenesh2_kg.3__2631__AT3G24050.1 GATA
485891 fgenesh2_kg.5__1883__AT3G54810.2 GATA
486528 fgenesh2_kg.5__2520__AT3G60530.1 GATA
490976 fgenesh2_kg.7__409__AT4G36620.1 GATA
491007 fgenesh2_kg.7__440__AT4G36240.1 GATA
491187 fgenesh2_kg.7__620__AT4G34680.2 GATA
491407 fgenesh2_kg.7__840__AT4G32890.1 GATA
492197 fgenesh2_kg.7__1630__AT4G26150.1 GATA
492399 fgenesh2_kg.7__1832__AT4G24470.2 CCT GATA tify
493120 fgenesh2_kg.7__2553__AT4G17570.1 GATA
495776 fgenesh2_kg.8__1592__AT5G56860.1 GATA
496973 fgenesh2_kg.8__2789__AT5G66320.1 GATA
863107 Al_scaffold_0006_2616 GATA
865791 Al_scaffold_0005_1270 GATA
866473 Al_scaffold_0005_1952 GATA
873583 Al_scaffold_0003_2224 GATA
875174 Al_scaffold_0003_3815 GATA
892135 scaffold_104929.1 CCT CCT_2 GATA tify
901675 scaffold_401176.1 GATA
903940 scaffold_403441.1 GATA
917909 scaffold_801309.1 GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577