Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 37 gene models in this family



Gene modelDescriptionDomains
AT1G08000.1 zinc finger (GATA type) family protein GATA
AT1G08000.2 zinc finger (GATA type) family protein GATA
AT1G08010.1 zinc finger (GATA type) family protein GATA
AT1G08010.2 zinc finger (GATA type) family protein GATA
AT1G51600.1 ZML2 (ZIM-LIKE 2); transcription factor CCT CCT_2 GATA tify
AT1G51600.2 ZML2 (ZIM-LIKE 2); transcription factor CCT CCT_2 GATA tify
AT2G18380.1 transcription factor GATA
AT2G28340.1 zinc finger (GATA type) family protein GATA
AT2G45050.1 zinc finger (GATA type) family protein GATA
AT3G06740.1 zinc finger (GATA type) family protein GATA
AT3G16870.1 zinc finger (GATA type) family protein GATA
AT3G20750.1 zinc finger (GATA type) family protein GATA
AT3G21175.1 ZML1 (ZIM-LIKE 1); transcription factor CCT CCT_2 GATA tify
AT3G21175.2 ZML1 (ZIM-LIKE 1); transcription factor CCT CCT_2 GATA tify
AT3G24050.1 GATA transcription factor 1 (GATA-1) GATA
AT3G45170.1 zinc finger (GATA type) family protein GATA
AT3G50870.1 MNP (MONOPOLE); transcription factor GATA
AT3G51080.1 zinc finger (GATA type) family protein GATA
AT3G54810.1 BME3/BME3-ZF (BLUE MICROPYLAR END3); transcription factor GATA
AT3G54810.2 BME3/BME3-ZF (BLUE MICROPYLAR END3); transcription factor GATA
AT3G60530.1 zinc finger (GATA type) family protein GATA
AT4G17570.1 zinc finger (GATA type) family protein GATA
AT4G24470.1 ZIM (ZINC-FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM); transcription factor CCT GATA tify
AT4G24470.2 ZIM (ZINC-FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM); transcription factor CCT GATA tify
AT4G26150.1 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor GATA
AT4G32890.1 zinc finger (GATA type) family protein GATA
AT4G34680.1 GATA transcription factor 3, putative (GATA-3) GATA
AT4G34680.2 GATA transcription factor 3, putative (GATA-3) GATA
AT4G36240.1 zinc finger (GATA type) family protein GATA
AT4G36620.1 zinc finger (GATA type) family protein GATA
AT5G25830.1 zinc finger (GATA type) family protein GATA
AT5G26930.1 zinc finger (GATA type) family protein GATA
AT5G47140.1 zinc finger (GATA type) family protein GATA
AT5G49300.1 zinc finger (GATA type) family protein GATA
AT5G56860.1 GNC (GATA, NITRATE-INDUCIBLE, CARBON METABOLISM-INVOLVED); transcription factor GATA
AT5G66320.1 zinc finger (GATA type) family protein GATA
AT5G66320.2 zinc finger (GATA type) family protein GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577

Specific references

Reyes, JC; Muro-Pastor, MI; Florencio, FJ. 2004. The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol. 134(4):1718-32 PUBMEDID:15084732
Teakle, GR; Manfield, IW; Graham, JF; Gilmartin, PM. 2002. Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol. Biol. 50(1):43-57 PUBMEDID:12139008