Plant Transcription factor database - Universität Potsdam
version: 3.0

Chlamydomonas reinhardtii C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 8 gene models in this family



Gene modelDescriptionDomains
127044 estExt_gwp_1H.C_60003 GATA
142190 Chlre2_kg.scaffold_3000163 GATA
171659 fgenesh2_pg.C_scaffold_1000280 GATA
187360 estExt_fgenesh2_pg.C_60027 GATA
205871 SKA_estExt_fgenesh2_pg.C_100216 GATA
345074 estExt_fgenesh1_pg.C_chromosome_80291 GATA
417527 pasa_Sanger_mRNA23284 GATA
426757 pasa_Sanger_mRNA7636 GATA Involucrin

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577