Plant Transcription factor database - Universität Potsdam
version: 3.0

Galdieria sulphuraria C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 8 gene models in this family



Gene modelDescriptionDomains
Gs02460.1 ref|XP_001417744.1|__predicted protein [Ostreococcus lucimarinus CCE9901] gb|ABO96037.1| predicted protein [Ostreococcus lucimarinus CCE9901] GATA
Gs04680.1 ref|NP_610266.1|__CG1845-PA [Drosophila melanogaster] gb|AAF59276.1| CG1845-PA [Drosophila melanogaster] gb|AAM50638.1| GH12223p [Drosophila melanogaster] Bromodomain GATA
Gs08570.1 gb|AAB47766.1|__SNF5 homolog BSH [Arabidopsis thaliana] | Symbols: BSH | BSH (bushy growth) | chr3:6017319-6019597 REVERSE 9953|protein SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily B member 1, putative, expressed GATA SNF5
Gs30490.1 GATA
Gs33690.1 ref|NP_001048947.1|__Os03g0145200 [Oryza sativa (japonica cultivar-group)] gb|AAO17352.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)] gb|ABF93947.1| GATA zinc finger family protein [Oryza sativa (japonica cultivar-group)] dbj|BAF10861.1| GATA
Gs39610.1 ref|NP_195015.1|__zinc finger (GATA type) family protein [Arabidopsis thaliana] sp|O82632|GAT11_ARATH GATA transcription factor 11 (AtGATA-11) emb|CAA21198.1| putative protein [Arabidopsis thaliana] emb|CAB80006.1| putative protein [Arabidopsis thaliana] GATA
Gs52620.1 emb|CAN75694.1|__hypothetical protein [Vitis vinifera] GATA
Gs54540.1 GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577