Plant Transcription factor database - Universität Potsdam
version: 3.0

Ostreococcus lucimarinus C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 9 gene models in this family



Gene modelDescriptionDomains
14167 fgenesh1_pg.C_Chr_2000110 GATA
15409 fgenesh1_pg.C_Chr_5000161 GATA
25644 estExt_fgenesh1_pg.C_Chr_160021 GATA
28580 eugene.1900010066 GATA Myb_DNA-binding
30438 eugene.0300010114 GATA
32466 eugene.0700010063 GATA
32750 eugene.0700010347 GATA
93058 ost_07_016_033 Bromodomain GATA
93136 ost_08_010_039 GATA WRKY

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577