Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 32 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g24070.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os01g24070.2 GATA zinc finger domain containing protein, expressed GATA
LOC_Os01g47360.1 GATA zinc finger domain containing protein GATA
LOC_Os01g54210.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os01g74540.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os02g05510.1 GATA transcription factor 25, putative, expressed CCT CCT_2 GATA tify
LOC_Os02g05510.3 GATA transcription factor 25, putative, expressed CCT CCT_2 GATA tify
LOC_Os02g12790.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os02g43150.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os02g43150.2 GATA zinc finger domain containing protein, expressed GATA
LOC_Os02g56250.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os03g03850.1 GATA zinc finger domain containing protein GATA
LOC_Os03g05160.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os03g47970.1 GATA transcription factor 25, putative, expressed CCT CCT_2 GATA tify
LOC_Os03g47970.2 GATA transcription factor 25, putative, expressed CCT CCT_2 GATA tify
LOC_Os03g52450.1 GATA transcription factor 25, putative, expressed CCT CCT_2 GATA tify
LOC_Os03g52450.2 GATA transcription factor 25, putative, expressed CCT CCT_2 GATA
LOC_Os03g61570.2 expressed protein GATA
LOC_Os04g46020.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os04g46020.2 GATA zinc finger domain containing protein, expressed GATA
LOC_Os05g06340.1 GATA zinc finger domain containing protein GATA
LOC_Os05g44400.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os05g49280.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os05g50270.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os06g37450.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os06g48534.1 GATA transcription factor 25, putative, expressed CCT CCT_2 GATA tify
LOC_Os10g32070.1 GATA zinc finger domain containing protein GATA
LOC_Os10g40810.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os11g08410.1 GATA zinc finger domain containing protein GATA
LOC_Os12g07120.1 GATA zinc finger domain containing protein, expressed GATA
LOC_Os12g07120.2 GATA zinc finger domain containing protein, expressed GATA
LOC_Os12g42970.1 GATA zinc finger domain containing protein, expressed GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577

Specific references

Reyes, JC; Muro-Pastor, MI; Florencio, FJ. 2004. The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol. 134(4):1718-32 PUBMEDID:15084732