Plant Transcription factor database - Universität Potsdam
version: 3.0

Physcomitrella patens C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 12 gene models in this family



Gene modelDescriptionDomains
135573 e_gw1.121.107.1 GATA
140427 e_gw1.167.135.1 GATA
145290 e_gw1.226.30.1 CCT CCT_2 GATA tify
159137 estExt_fgenesh1_pg.C_90243 GATA
166660 estExt_fgenesh1_pg.C_1210016 GATA
166697 estExt_fgenesh1_pg.C_1220019 GATA
16797 gw1.68.123.1 CCT CCT_2 GATA tify
173099 estExt_fgenesh1_pg.C_4100005 GATA
232610 fgenesh2_pm.scaffold_111000001 CCT CCT_2 GATA tify
34911 gw1.241.56.1 GATA
57561 fgenesh1_pm.scaffold_69000012 CCT CCT_2 GATA tify
64713 fgenesh1_pg.scaffold_3000165 GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577