Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 30 gene models in this family



Gene modelDescriptionDomains
125842 fgenesh1_pm.C_chr_3000873 GATA
147227 estExt_fgenesh1_kg.C_chr_10204 CCT CCT_2 GATA tify
3993656 gw1.5.835.1 GATA
3993661 gw1.4.815.1 GATA
4004187 gw1.1.2005.1 GATA
4743424 estExt_Genewise1.C_chr_17673 GATA
4814512 e_gw1.4.17608.1 GATA
4884669 estExt_Genewise1Plus.C_chr_48655 GATA
4892307 estExt_Genewise1Plus.C_chr_80905 GATA
4975775 fgenesh1_pg.C_chr_3002890 GATA
4984834 fgenesh1_pg.C_chr_6001721 GATA
4992294 fgenesh1_pg.C_chr_9002022 GATA
4992590 fgenesh1_pg.C_chr_9002318 GATA
4992661 fgenesh1_pg.C_chr_9002389 GATA
4996307 estExt_fgenesh1_pg.C_chr_10219 GATA
4996746 estExt_fgenesh1_pg.C_chr_10922 CCT CCT_2 GATA tify
4996948 estExt_fgenesh1_pg.C_chr_11250 GATA
5003816 estExt_fgenesh1_pg.C_chr_40843 GATA
5006682 estExt_fgenesh1_pg.C_chr_61728 GATA
5011057 estExt_fgenesh1_pg.C_chr_101815 GATA
5011419 estExt_fgenesh1_pg.C_chr_102529 CCT CCT_2 GATA tify
5029028 Sb01g020090 GATA
5037464 Sb04g002093 GATA
5040684 Sb05g022380 GATA
5044597 Sb08g004360 GATA
5044599 Sb08g004370 GATA
5045586 Sb08g022276 GATA
5045927 Sb09g004315 GATA
5053085 Sb03g013700 GATA
5054477 Sb03g047520 GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577