Plant Transcription factor database - Universität Potsdam
version: 3.0

Selaginella moellendorffii C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 7 gene models in this family



Gene modelDescriptionDomains
177195 estExt_Genewise1Plus.C_380364 CCT CCT_2 GATA tify
29495 gw1.13.397.1 GATA
405209 fgenesh2_pg.C_scaffold_3000432 GATA
409922 fgenesh2_pg.C_scaffold_11000305 CCT GATA tify
440037 estExt_fgenesh2_pg.C_90061 GATA
69510 gw1.7.1367.1 GATA
69566 gw1.0.1826.1 GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577