Plant Transcription factor database - Universität Potsdam
version: 3.0

Vitis vinifera C2C2-GATA Family

Description

Lowry & Atchley. 2000: The GATA-binding transcription factors comprise a protein family whose members contain either one or two highly conserved zinc finger DNA-binding domains. Members of this group have been identified in organisms ranging from cellular slime mold to vertebrates, including plants, fungi, nematodes, insects, and echinoderms.

Members of this family
  SHOULD possess GATA domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Reyes et al. 2004 for A. thaliana were taken as gold standard.

The gold standard reported 29 members for this family, 29 of which are present in ArabTFDB, giving a PPV and a Sensitivity of 1.00.

This family is also present in:

References

There are 20 gene models in this family



Gene modelDescriptionDomains
GSVIVP00001889001 CCT GATA tify
GSVIVP00001890001 CCT CCT_2 GATA tify
GSVIVP00013494001 GATA
GSVIVP00015084001 CCT CCT_2 GATA tify
GSVIVP00016564001 GATA
GSVIVP00018182001 GATA
GSVIVP00019179001 GATA
GSVIVP00020448001 GATA
GSVIVP00020624001 GATA
GSVIVP00022648001 GATA
GSVIVP00024548001 GATA
GSVIVP00024922001 GATA
GSVIVP00025490001 GATA
GSVIVP00028067001 GATA
GSVIVP00029575001 CCT CCT_2 GATA tify
GSVIVP00032414001 GATA
GSVIVP00033096001 GATA
GSVIVP00034329001 GATA
GSVIVP00035949001 GATA
GSVIVP00036842001 GATA

General references

Lowry, JA; Atchley, WR. 2000. Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain. J. Mol. Evol. 50(2):103-15 PUBMEDID:10684344
Omichinski, JG; Clore, GM; Schaad, O; Felsenfeld, G; Trainor, C; Appella, E; Stahl, SJ; Gronenborn, AM. 1993. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261(5120):438-46 PUBMEDID:8332909
Takatsuji, H. 1998. Zinc-finger transcription factors in plants. Cell. Mol. Life Sci. 54(6):582-96 PUBMEDID:9676577