Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata C2H2 Family

Description

Englbrecht et al. 2004: C2H2 zinc fingers (ZF) display a wide range of functions, from DNA or RNA binding to the involvement in protein-protein interactions. Therefore ZFPs not only act in transcriptional regulation, either directly or through site-specific modification and/or regulation of chromatin, but also participate in RNA metabolism and in other cellular functions that probably require specific protein contacts of the ZF domain.

Members of this family
  SHOULD possess zf-C2H2 domain
  SHOULD NOT possess PHD domain

Domain alignments

This family is also present in:

References

There are 103 gene models in this family



Gene modelDescriptionDomains
312456 fgenesh1_pm.C_scaffold_1001236 zf-C2H2
314403 fgenesh1_pm.C_scaffold_1003183 zf-C2H2
318837 fgenesh1_pm.C_scaffold_3001853 zf-C2H2
323008 fgenesh1_pm.C_scaffold_5000552 zf-C2H2
325146 fgenesh1_pm.C_scaffold_6000366 zf-C2H2
326585 fgenesh1_pm.C_scaffold_6001805 zf-C2H2
328581 fgenesh1_pm.C_scaffold_7000808 zf-C2H2
333453 fgenesh1_pg.C_scaffold_1000018 zf-C2H2
333455 fgenesh1_pg.C_scaffold_1000020 zf-C2H2
334119 fgenesh1_pg.C_scaffold_1000684 zf-C2H2
349656 fgenesh1_pg.C_scaffold_6000249 zf-C2H2
352566 fgenesh1_pg.C_scaffold_6003159 zf-C2H2
357440 fgenesh1_pg.C_scaffold_8001227 zf-C2H2
470357 fgenesh2_kg.1__311__AT1G03840.2 zf-C2H2
471161 fgenesh2_kg.1__1115__AT1G10480.1 zf-C2H2
471484 fgenesh2_kg.1__1438__AT1G13290.1 zf-C2H2
472748 fgenesh2_kg.1__2702__AT1G26610.1 zf-C2H2
472750 fgenesh2_kg.1__2704__AT1G26590.1 zf-C2H2
472884 fgenesh2_kg.1__2838__AT1G24625.1 zf-C2H2
472978 fgenesh2_kg.1__2932__AT1G27730.1 zf-C2H2
473343 fgenesh2_kg.1__3297__AT1G30970.1 zf-C2H2
473593 fgenesh2_kg.1__3547__AT1G34370.2 zf-C2H2
473652 fgenesh2_kg.1__3606__AT1G34790.1 zf-C2H2
475716 fgenesh2_kg.2__846__AT1G66140.1 zf-C2H2
475906 fgenesh2_kg.2__1036__AT1G68130.1 zf-C2H2
476336 fgenesh2_kg.2__1466__AT1G72050.2 zf-C2H2
476719 fgenesh2_kg.2__1849__AT1G75710.1 zf-C2H2
477174 fgenesh2_kg.2__2304__AT1G80730.1 zf-C2H2
477432 fgenesh2_kg.3__133__AT3G01030.1 zf-C2H2
478379 fgenesh2_kg.3__1080__AT3G10470.1 zf-C2H2
478784 fgenesh2_kg.3__1485__AT3G13810.1 zf-C2H2
479472 fgenesh2_kg.3__2173__AT3G19580.2 zf-C2H2
479823 fgenesh2_kg.3__2524__AT3G23130.1 zf-C2H2
480534 fgenesh2_kg.3__3235__AT2G19380.1 RRM_1 zf-C2H2 zf-LYAR
481235 fgenesh2_kg.4__295__AT2G23740.1 Pre-SET SET zf-C2H2
481569 fgenesh2_kg.4__629__AT2G26940.1 zf-C2H2
481690 fgenesh2_kg.4__750__AT2G28200.1 zf-C2H2
481881 fgenesh2_kg.4__941__AT2G29660.1 zf-C2H2
482736 fgenesh2_kg.4__1796__AT2G37430.1 zf-C2H2
483645 fgenesh2_kg.4__2705__AT2G45120.1 zf-C2H2
484002 fgenesh2_kg.4__3062__AT2G48100.3 Exonuc_X-T zf-C2H2
484116 fgenesh2_kg.5__108__AT2G01940.1 zf-C2H2
484989 fgenesh2_kg.5__981__AT3G46090.1 zf-C2H2
485204 fgenesh2_kg.5__1196__AT3G48430.1 JmjC JmjN zf-C2H2
485352 fgenesh2_kg.5__1344__AT3G49930.1 zf-C2H2
485418 fgenesh2_kg.5__1410__AT3G50700.1 zf-C2H2
485744 fgenesh2_kg.5__1736__AT3G53600.1 zf-C2H2
486194 fgenesh2_kg.5__2186__AT3G57480.1 zf-AN1 zf-C2H2
486217 fgenesh2_kg.5__2209__AT3G57670.1 zf-C2H2
486259 fgenesh2_kg.5__2251__AT3G58070.1 zf-C2H2
486883 fgenesh2_kg.6__17__AT5G01860.1 zf-C2H2
487085 fgenesh2_kg.6__219__AT5G03150.1 zf-C2H2
487204 fgenesh2_kg.6__338__AT5G04240.1 JmjC JmjN zf-C2H2
487408 fgenesh2_kg.6__542__AT5G06070.1 zf-C2H2
487475 fgenesh2_kg.6__609__AT5G06650.1 zf-C2H2
487793 fgenesh2_kg.6__927__AT5G09740.1 MOZ_SAS zf-C2H2
488229 fgenesh2_kg.6__1363__AT5G14010.1 zf-C2H2
489543 fgenesh2_kg.6__2677__AT5G27880.1 zf-C2H2
489687 fgenesh2_kg.6__2821__AT4G06634.1 zf-C2H2
490032 fgenesh2_kg.6__3166__AT4G12240.1 zf-C2H2
492266 fgenesh2_kg.7__1699__AT4G25610.1 zf-C2H2
493092 fgenesh2_kg.7__2525__AT4G17810.1 zf-C2H2
493215 fgenesh2_kg.7__2648__AT4G16610.1 zf-C2H2
495709 fgenesh2_kg.8__1525__AT5G56200.1 zf-C2H2
496306 fgenesh2_kg.8__2122__AT5G61470.1 zf-C2H2
496511 fgenesh2_kg.8__2327__AT5G63280.1 zf-C2H2
496850 fgenesh2_kg.8__2666__AT5G67450.1 zf-C2H2
496927 fgenesh2_kg.8__2743__AT5G66730.1 zf-C2H2
497512 fgenesh2_kg.675__1__AT5G57520.1 zf-C2H2
855785 Al_scaffold_0409_3 zf-C2H2
880976 Al_scaffold_0001_2743 zf-C2H2
882294 Al_scaffold_0001_4061 zf-C2H2
883118 Al_scaffold_0001_4885 zf-C2H2
886281 Al_scaffold_0008_2545 zf-C2H2
892084 scaffold_104878.1 zf-C2H2
899797 scaffold_303767.1 zf-C2H2
900055 scaffold_304025.1 zf-C2H2
900233 scaffold_304203.1 zf-C2H2
901824 scaffold_401325.1 zf-C2H2
902954 scaffold_402455.1 zf-C2H2
903524 scaffold_403025.1 zf-AN1 zf-C2H2
903538 scaffold_403039.1 zf-C2H2
903597 scaffold_403098.1 zf-C2H2
904431 scaffold_500135.1 zf-C2H2
904432 scaffold_500136.1 zf-C2H2
905682 scaffold_501386.1 zf-C2H2
906087 scaffold_501791.1 JmjC JmjN zf-C2H2
906780 scaffold_502484.1 zf-C2H2
907587 scaffold_503291.1 zf-C2H2
908222 scaffold_600279.1 zf-C2H2
908317 scaffold_600374.1 zf-C2H2
908323 scaffold_600380.1 zf-C2H2
909054 scaffold_601111.1 zf-C2H2
909520 scaffold_601577.1 zf-C2H2
910303 scaffold_602360.1 zf-C2H2
910560 scaffold_602617.1 zf-C2H2
912851 scaffold_700593.1 zf-C2H2
917204 scaffold_800604.1 zf-C2H2
917293 scaffold_800693.1 zf-C2H2
917370 scaffold_800770.1 zf-C2H2
919218 scaffold_802618.1 zf-C2H2
919530 scaffold_802930.1 zf-C2H2
919533 scaffold_802933.1 zf-C2H2

General references

Ciftci-Yilmaz, S; Mittler, R. 2008. The zinc finger network of plants. Cell. Mol. Life Sci. 65(7-8):1150-60 PUBMEDID:18193167
Iuchi, S. 2001. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4):625-35 PUBMEDID:11361095
Takatsuji, H. 1999. Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol. Biol. 39(6):1073-8 PUBMEDID:10380795