Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana C2H2 Family

Description

Englbrecht et al. 2004: C2H2 zinc fingers (ZF) display a wide range of functions, from DNA or RNA binding to the involvement in protein-protein interactions. Therefore ZFPs not only act in transcriptional regulation, either directly or through site-specific modification and/or regulation of chromatin, but also participate in RNA metabolism and in other cellular functions that probably require specific protein contacts of the ZF domain.

Members of this family
  SHOULD possess zf-C2H2 domain
  SHOULD NOT possess PHD domain

Domain alignments

This family is also present in:

References

There are 112 gene models in this family



Gene modelDescriptionDomains
AT1G02030.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G02040.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G03840.1 MGP (MAGPIE); nucleic acid binding / protein binding / transcription factor/ zinc ion binding zf-C2H2
AT1G03840.2 MGP (MAGPIE); nucleic acid binding / zinc ion binding zf-C2H2
AT1G08290.1 zinc finger (C2H2 type) protein (WIP3) zf-C2H2
AT1G10480.1 ZFP5 (ZINC FINGER PROTEIN 5); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G13290.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G14580.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G24625.1 ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G25250.1 ATIDD16 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 16); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G26590.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G26610.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G27730.1 STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G30970.1 SUF4 (SUPPRESSOR OF FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor zf-C2H2
AT1G34370.1 STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G34370.2 STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G34370.3 STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1); nucleic acid binding / zinc ion binding zf-C2H2
AT1G34790.1 TT1 (TRANSPARENT TESTA 1); transcription factor zf-C2H2
AT1G49900.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G51220.1 zinc finger (C2H2 type) protein (WIP5) zf-C2H2
AT1G55110.1 ATIDD7 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 7); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G66140.1 ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G68130.1 ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT1G68130.2 ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14) zf-C2H2
AT1G72050.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G72050.2 zinc finger (C2H2 type) family protein zf-C2H2
AT1G75710.1 zinc finger (C2H2 type) family protein zf-C2H2
AT1G80730.1 ZFP1 (ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT2G01940.1 ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT2G01940.2 ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5); nucleic acid binding / zinc ion binding zf-C2H2
AT2G01940.3 ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5) zf-C2H2
AT2G02070.1 ATIDD5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 5); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT2G02080.1 ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4); transcription factor zf-C2H2
AT2G02080.2 ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4) zf-C2H2
AT2G15740.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G17180.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G18490.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G23740.1 nucleic acid binding / transcription factor/ zinc ion binding Pre-SET SET zf-C2H2
AT2G26940.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G28200.1 nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT2G28710.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G29660.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G37430.1 zinc finger (C2H2 type) family protein (ZAT11) zf-C2H2
AT2G37740.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G41835.1 zinc finger (C2H2 type, AN1-like) family protein zf-AN1 zf-C2H2
AT2G41940.1 ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT2G42410.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G45120.1 zinc finger (C2H2 type) family protein zf-C2H2
AT2G48100.1 exonuclease family protein Exonuc_X-T zf-C2H2
AT2G48100.2 exonuclease family protein Exonuc_X-T zf-C2H2
AT2G48100.3 exonuclease family protein Exonuc_X-T zf-C2H2
AT2G48100.4 exonuclease family protein zf-C2H2
AT3G10470.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G13810.1 ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT3G19580.1 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT3G19580.2 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2) zf-C2H2
AT3G20880.1 zinc finger (C2H2 type) protein (WIP4) zf-C2H2
AT3G23130.1 SUP (SUPERMAN); DNA binding / nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT3G29340.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G45260.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G46070.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G46080.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G46090.1 ZAT7; nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT3G48430.1 REF6 (RELATIVE OF EARLY FLOWERING 6); transcription factor JmjC JmjN zf-C2H2
AT3G49930.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G50700.1 ATIDD2 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 2); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT3G53600.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G53820.1 zinc finger (C2H2 type) family protein zf-C2H2
AT3G57480.1 zinc finger (C2H2 type, AN1-like) family protein zf-AN1 zf-C2H2
AT3G57670.1 NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT3G58070.1 GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT3G60580.1 zinc finger (C2H2 type) family protein zf-C2H2
AT4G02670.1 ATIDD12 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 12); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT4G06634.1 zinc finger (C2H2 type) family protein zf-C2H2
AT4G06634.2 zinc finger (C2H2 type) family protein zf-C2H2
AT4G12240.1 zinc finger (C2H2 type) family protein zf-C2H2
AT4G16610.1 zinc finger (C2H2 type) family protein zf-C2H2
AT4G17810.1 nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT4G25610.1 zinc finger (C2H2 type) family protein zf-C2H2
AT4G35280.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G01860.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G03150.1 JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding zf-C2H2
AT5G03510.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); nucleic acid binding / zinc ion binding zf-C2H2
AT5G04240.1 ELF6 (EARLY FLOWERING 6); transcription factor JmjC JmjN zf-C2H2
AT5G04340.1 C2H2 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G04390.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G05120.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G06070.1 RBE (RABBIT EARS); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G06650.1 GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G09740.1 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2); H3/H4 histone acetyltransferase/ nucleic acid binding / zinc ion binding MOZ_SAS zf-C2H2
AT5G10970.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G14010.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G15480.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G22890.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G22990.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G25160.1 ZFP3 (ZINC FINGER PROTEIN 3); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G27880.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G40310.1 exonuclease family protein Exonuc_X-T zf-C2H2
AT5G42640.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G43170.1 AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G43540.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G44160.1 NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G52010.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G56200.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G57520.1 ZFP2 (ZINC FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G59820.1 RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2
AT5G60470.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G61470.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G63280.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G66730.1 zinc finger (C2H2 type) family protein zf-C2H2
AT5G67450.1 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding zf-C2H2

General references

Ciftci-Yilmaz, S; Mittler, R. 2008. The zinc finger network of plants. Cell. Mol. Life Sci. 65(7-8):1150-60 PUBMEDID:18193167
Iuchi, S. 2001. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4):625-35 PUBMEDID:11361095
Takatsuji, H. 1999. Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol. Biol. 39(6):1073-8 PUBMEDID:10380795

Specific references

Englbrecht, CC; Schoof, H; Böhm, S. 2004. Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics 5(1):39 PUBMEDID:15236668
Sakamoto, H; Maruyama, K; Sakuma, Y; Meshi, T; Iwabuchi, M; Shinozaki, K; Yamaguchi-Shinozaki, K. 2004. Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. Plant Physiol. 136(1):2734-46 PUBMEDID:15333755