Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica C2H2 Family

Description

Englbrecht et al. 2004: C2H2 zinc fingers (ZF) display a wide range of functions, from DNA or RNA binding to the involvement in protein-protein interactions. Therefore ZFPs not only act in transcriptional regulation, either directly or through site-specific modification and/or regulation of chromatin, but also participate in RNA metabolism and in other cellular functions that probably require specific protein contacts of the ZF domain.

Members of this family
  SHOULD possess zf-C2H2 domain
  SHOULD NOT possess PHD domain

Domain alignments

This family is also present in:

References

There are 102 gene models in this family



Gene modelDescriptionDomains
OsIBCD000618 Chr01_922,1464,,,1,1464, zf-C2H2
OsIBCD000935 Chr01_1364,1380,,,1,1380, zf-C2H2
OsIBCD002366 Chr01_3767,1971,,,1,1971, zf-C2H2
OsIBCD003543 Chr01_5470,1470,,,1,1470, zf-C2H2
OsIBCD003945 Chr01_6077,1125,,,1,1125, zf-C2H2
OsIBCD004232 Chr01_6474,3861,,,1,3861, JmjC JmjN zf-C2H2
OsIBCD004243 Chr01_6488,5361,,,1,5361, Helicase_C PAZ Ribonuclease_3 dsRNA_bind zf-C2H2
OsIBCD004425 Chr01_6749,1431,,,1,1431, zf-C2H2
OsIBCD004824 Chr02_158,1110,,,1,1110, zf-C2H2
OsIBCD005401 Chr02_993,960,,,1,960, zf-C2H2
OsIBCD006630 Chr02_3111,1479,,,1,1479, zf-C2H2
OsIBCD007523 Chr02_4470,909,,,1,909, zf-C2H2
OsIBCD008879 Chr03_485,1956,,,1,1956, zf-C2H2
OsIBCD008890 Chr03_505,4464,,,1,4464, JmjC JmjN zf-C2H2
OsIBCD009168 Chr03_884,1461,,,1,1461, zf-C2H2
OsIBCD009411 Chr03_1205,1098,,,1,1098, zf-C2H2
OsIBCD012438 Chr03_6000,1170,,,1,1170, Cofilin_ADF zf-C2H2
OsIBCD012880 Chr04_159,1437,,,1,1437, zf-C2H2
OsIBCD014659 Chr04_3260,1992,,,1,1992, zf-C2H2
OsIBCD015278 Chr04_4144,1938,,,1,1938, zf-C2H2
OsIBCD016094 Chr04_5282,1440,,,1,1440, zf-C2H2
OsIBCD016170 Chr05_50,723,,,1,723, zf-C2H2
OsIBCD016171 Chr05_51,1212,,,1,1212, zf-C2H2
OsIBCD016269 Chr05_192,1440,,,1,1440, zf-C2H2
OsIBCD018180 Chr05_3463,1179,,,1,1179, zf-C2H2
OsIBCD019098 Chr05_4810,822,,,1,822, zf-C2H2
OsIBCD019765 Chr06_1005,1740,,,1,1740, zf-C2H2
OsIBCD020285 Chr06_1838,1623,,,1,1623, zf-C2H2
OsIBCD021377 Chr06_3810,1026,,,1,1026, zf-C2H2
OsIBCD023942 Chr07_3164,873,,,1,873, zf-AN1 zf-C2H2
OsIBCD024009 Chr07_3270,1605,,,1,1605, zf-C2H2
OsIBCD024067 Chr07_3360,942,,,1,942, zf-C2H2
OsIBCD025926 Chr08_2058,5214,,,1,5214, DUF889 zf-C2H2
OsIBCD025930 Chr08_2062,1062,,,1,1062, zf-C2H2
OsIBCD026902 Chr08_3791,2163,,,1,2163, zf-C2H2
OsIBCD026904 Chr08_3793,2589,,,1,2589, zf-C2H2
OsIBCD027348 Chr08_4451,1506,,,1,1506, zf-C2H2
OsIBCD027360 Chr08_4465,729,,,1,729, zf-C2H2
OsIBCD027578 Chr09_206,1251,,,1,1251, zf-C2H2
OsIBCD027999 Chr09_1089,1149,,,1,1149, zf-C2H2
OsIBCD028750 Chr09_2280,1515,,,1,1515, zf-C2H2
OsIBCD028943 Chr09_2608,1329,,,1,1329, zf-C2H2
OsIBCD029353 Chr09_3185,1614,,,1,1614, zf-C2H2
OsIBCD029375 Chr09_3217,522,,,1,522, zf-C2H2
OsIBCD029390 Chr09_3238,1038,,,1,1038, zf-C2H2
OsIBCD029457 Chr09_3320,1671,,,1,1671, zf-C2H2
OsIBCD030591 Chr10_1965,1431,,,1,1431, zf-C2H2
OsIBCD031968 Chr11_571,1335,,,1,1335, zf-C2H2
OsIBCD033830 Chr12_122,1296,,,1,1296, zf-C2H2
OsIBCD034566 Chr12_1296,4056,,,1,4056, JmjC JmjN zf-C2H2
OsIBCD037085 Chr01_6195,1569,,,1,1569, zf-C2H2
OsIBCD037110 Chr01_6339,1287,,,1,1287, zf-C2H2
OsIBCD037271 Chr02_9,384,,,1,384, zf-C2H2
OsIBCD037439 Chr02_847,585,,,1,585, zf-C2H2
OsIBCD037907 Chr02_3512,420,,,1,420, zf-C2H2
OsIBCD037929 Chr02_3622,582,,,1,582, zf-C2H2
OsIBCD038100 Chr02_4382,1860,,,1,1860, zf-C2H2
OsIBCD038101 Chr02_4385,1026,,,1,1026, zf-C2H2
OsIBCD038378 Chr02_5780,984,,,1,984, zf-C2H2
OsIBCD038623 Chr03_1228,723,,,1,723, zf-C2H2
OsIBCD038671 Chr03_1430,1365,,,1,1365, zf-C2H2
OsIBCD038982 Chr03_3036,1254,,,1,1254, zf-C2H2
OsIBCD039011 Chr03_3168,603,,,1,603, zf-C2H2
OsIBCD039012 Chr03_3173,603,,,1,603, zf-C2H2
OsIBCD039013 Chr03_3174,663,,,1,663, zf-C2H2
OsIBCD039168 Chr03_4026,1035,,,1,1035, zf-C2H2
OsIBCD039342 Chr03_4940,1431,,,1,1431, zf-C2H2
OsIBCD039458 Chr03_5498,810,,,1,810, zf-C2H2
OsIBCD039553 Chr03_5999,513,,,1,513, zf-C2H2
OsIBCD039584 Chr03_6152,1155,,,1,1155, zf-C2H2
OsIBCD039727 Chr04_554,1038,,,1,1038, zf-C2H2
OsIBCD039736 Chr04_574,1116,,,1,1116, zf-C2H2
OsIBCD039741 Chr04_611,489,,,1,489, zf-C2H2
OsIBCD040168 Chr04_2983,528,,,1,528, zf-C2H2
OsIBCD040370 Chr04_4020,1677,,,1,1677, zf-C2H2
OsIBCD040371 Chr04_4021,936,,,1,936, zf-C2H2
OsIBCD040451 Chr04_4359,582,,,1,582, zf-C2H2
OsIBCD040638 Chr05_132,597,,,1,597, zf-C2H2
OsIBCD040993 Chr05_2018,957,,,1,957, zf-C2H2
OsIBCD041277 Chr05_3607,597,,,1,597, zf-C2H2
OsIBCD041702 Chr06_663,1371,,,1,1371, zf-C2H2
OsIBCD042509 Chr06_4829,555,,,1,555, zf-C2H2
OsIBCD042516 Chr07_15,840,,,1,840, zf-C2H2
OsIBCD042917 Chr07_1895,312,,,1,312, zf-C2H2
OsIBCD043200 Chr07_3348,663,,,1,663, zf-C2H2
OsIBCD043201 Chr07_3349,456,,,1,456, zf-C2H2
OsIBCD043216 Chr07_3421,1266,,,1,1266, zf-C2H2
OsIBCD043226 Chr07_3439,972,,,1,972, zf-C2H2
OsIBCD043720 Chr08_1788,930,,,1,930, zf-C2H2
OsIBCD044228 Chr08_4547,1164,,,1,1164, zf-C2H2
OsIBCD044616 Chr09_2123,390,,,1,390, zf-C2H2
OsIBCD045128 Chr10_1259,627,,,1,627, zf-C2H2
OsIBCD046306 Chr11_3495,507,,,1,507, zf-C2H2
OsIBCD046307 Chr11_3496,507,,,1,507, zf-C2H2
OsIBCD046309 Chr11_3502,495,,,1,495, zf-C2H2
OsIBCD046322 Chr11_3542,738,,,1,738, zf-C2H2
OsIBCD046348 Chr12_123,1362,,,1,1362, zf-C2H2
OsIBCD046477 Chr12_653,1437,,,1,1437, zf-C2H2
OsIBCD046869 Chr12_2841,1086,,,1,1086, zf-C2H2
OsIBCD046870 Chr12_2843,1092,,,1,1092, zf-C2H2
OsIBCD046872 Chr12_2847,828,,,1,828, zf-C2H2
OsIBCD046880 Chr12_2881,753,,,1,753, zf-C2H2

General references

Ciftci-Yilmaz, S; Mittler, R. 2008. The zinc finger network of plants. Cell. Mol. Life Sci. 65(7-8):1150-60 PUBMEDID:18193167
Iuchi, S. 2001. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4):625-35 PUBMEDID:11361095
Takatsuji, H. 1999. Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol. Biol. 39(6):1073-8 PUBMEDID:10380795