Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica C2H2 Family

Description

Englbrecht et al. 2004: C2H2 zinc fingers (ZF) display a wide range of functions, from DNA or RNA binding to the involvement in protein-protein interactions. Therefore ZFPs not only act in transcriptional regulation, either directly or through site-specific modification and/or regulation of chromatin, but also participate in RNA metabolism and in other cellular functions that probably require specific protein contacts of the ZF domain.

Members of this family
  SHOULD possess zf-C2H2 domain
  SHOULD NOT possess PHD domain

Domain alignments

This family is also present in:

References

There are 131 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g09850.1 ZOS1-04 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g09850.2 ZOS1-04 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g09850.3 ZOS1-04 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g14010.1 ZOS1-05 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g39110.1 ZOS1-10 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g57650.1 ZOS1-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g63980.1 ZOS1-17 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g65080.1 ZOS1-18 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g65080.2 ZOS1-18 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g65080.3 ZOS1-18 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g65080.4 ZOS1-18 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g66570.1 ZOS1-19 - C2H2 zinc finger protein zf-C2H2
LOC_Os01g67970.1 ZOS1-20 - C2H2 zinc finger protein, expressed JmjC JmjN zf-C2H2
LOC_Os01g68160.1 ZOS1-22 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os01g70870.1 ZOS1-23 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g01090.1 ZOS2-01 - C2H2 zinc finger protein zf-C2H2
LOC_Os02g02424.1 ZOS2-02 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g02424.2 ZOS2-02 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g02424.3 ZOS2-02 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g08510.1 ZOS2-04 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g31890.1 ZOS2-08 - C2H2 zinc finger protein zf-C2H2
LOC_Os02g34680.1 ZOS2-09 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g35460.1 ZOS2-10 - C2H2 zinc finger protein zf-C2H2
LOC_Os02g36360.1 ZOS2-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g36360.2 ZOS2-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g36360.3 ZOS2-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g44120.1 ZOS2-13 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g44130.1 ZOS2-14 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g45054.1 ZOS2-15 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g45054.2 ZOS2-15 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g45054.3 ZOS2-15 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g45054.4 ZOS2-15 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os02g57790.1 ZOS2-19 - C2H2 zinc finger protein zf-C2H2
LOC_Os03g05480.1 ZOS3-01 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g05690.1 ZOS3-03 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g10140.1 ZOS3-04 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g13400.1 ZOS3-06 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g13600.1 ZOS3-07 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g13600.2 ZOS3-07 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g15790.1 ZOS3-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g31240.1 ZOS3-10 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g32220.1 ZOS3-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g32230.1 ZOS3-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g40710.1 ZOS3-13 - C2H2 zinc finger protein zf-C2H2
LOC_Os03g49132.1 ZOS3-16 - C2H2 zinc finger protein zf-C2H2
LOC_Os03g55540.1 ZOS3-18 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g60560.1 ZOS3-21 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g60570.1 ZOS3-22 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os03g62230.1 ZOS3-24 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g02510.1 ZOS4-01 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g08060.1 ZOS4-03 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g08290.1 ZOS4-04 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g08600.1 ZOS4-05 - C2H2 zinc finger protein zf-C2H2
LOC_Os04g36650.1 ZOS4-06 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g39520.1 ZOS4-08 - C2H2 zinc finger protein zf-C2H2
LOC_Os04g46670.1 ZOS4-09 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g46680.1 ZOS4-10 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g47860.2 ZOS4-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g47860.3 ZOS4-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g47860.4 ZOS4-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g47860.5 ZOS4-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g47860.6 ZOS4-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os04g50070.1 ZOS4-13 - C2H2 zinc finger protein zf-C2H2
LOC_Os04g59380.1 ZOS4-14 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os05g01550.1 ZOS5-01 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os05g02390.1 ZOS5-02 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os05g03020.1 ZOS5-03 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os05g14130.1 ZOS5-05 - C2H2 zinc finger protein zf-C2H2
LOC_Os05g20930.1 ZOS5-07 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os05g37190.1 ZOS5-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os05g38620.1 ZOS5-10 - C2H2 zinc finger protein zf-C2H2
LOC_Os05g51830.1 ZOS5-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os06g07020.1 ZOS6-01 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os06g10470.1 ZOS6-02 - C2H2 zinc finger protein zf-C2H2
LOC_Os06g20020.1 ZOS6-03 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os06g40960.1 ZOS6-05 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os06g51140.1 ZOS6-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os07g01180.1 ZOS7-01 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os07g23450.1 ZOS7-04 - C2H2 zinc finger protein zf-C2H2
LOC_Os07g38240.1 ZOS7-05 - C2H2 zinc finger protein, expressed zf-AN1 zf-C2H2
LOC_Os07g39310.1 ZOS7-06 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os07g39960.1 ZOS7-07 - C2H2 zinc finger protein zf-C2H2
LOC_Os07g39970.1 ZOS7-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os07g40080.1 ZOS7-09 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os07g40780.1 ZOS7-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os07g40950.1 ZOS7-12 - C2H2 zinc finger protein zf-C2H2
LOC_Os08g17640.1 ZOS8-02 - C2H2 zinc finger protein zf-C2H2
LOC_Os08g20580.1 ZOS8-04 - C2H2 zinc finger protein zf-C2H2
LOC_Os08g36390.1 ZOS8-07 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37904.1 ZOS8-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37904.2 ZOS8-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37904.3 ZOS8-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37904.4 ZOS8-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37904.5 ZOS8-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37904.6 ZOS8-08 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37920.1 ZOS8-09 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g37920.2 ZOS8-09 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g39390.1 ZOS8-10 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g44050.1 ZOS8-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g44050.2 ZOS8-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g44050.3 ZOS8-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g44050.4 ZOS8-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g44190.1 ZOS8-13 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os08g44830.1 ZOS8-14 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g03500.1 ZOS9-01 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g10980.1 ZOS9-02 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g13680.1 ZOS9-04 - C2H2 zinc finger protein zf-C2H2
LOC_Os09g26210.1 ZOS9-12 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g27650.1 ZOS9-14 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g27650.2 ZOS9-14 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g31140.1 ZOS9-16 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g38340.1 ZOS9-17 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g38340.2 ZOS9-17 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g38340.3 ZOS9-17 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g38610.1 ZOS9-18 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g38790.1 ZOS9-19 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g38790.2 ZOS9-19 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g38790.3 ZOS9-19 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g39660.1 ZOS9-21 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os09g39660.2 ZOS9-21 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os10g28330.1 ZOS10-04 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os11g06840.1 ZOS11-01 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os11g25610.1 ZOS11-02 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os11g47620.1 ZOS11-09 - C2H2 zinc finger protein zf-C2H2
LOC_Os11g47630.1 ZOS11-10 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os11g48000.1 ZOS11-11 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os12g07280.1 ZOS12-02 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os12g18150.1 ZOS12-04 - C2H2 zinc finger protein, expressed JmjC JmjN zf-C2H2
LOC_Os12g38940.1 ZOS12-06 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os12g38960.1 ZOS12-07 - C2H2 zinc finger protein, expressed zf-C2H2
LOC_Os12g39400.1 ZOS12-09 - C2H2 zinc finger protein, expressed zf-C2H2

General references

Ciftci-Yilmaz, S; Mittler, R. 2008. The zinc finger network of plants. Cell. Mol. Life Sci. 65(7-8):1150-60 PUBMEDID:18193167
Iuchi, S. 2001. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4):625-35 PUBMEDID:11361095
Takatsuji, H. 1999. Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol. Biol. 39(6):1073-8 PUBMEDID:10380795

Specific references

Agarwal, P; Arora, R; Ray, S; Singh, AK; Singh, VP; Takatsuji, H; Kapoor, S; Tyagi, AK. 2007. Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis. Plant Mol. Biol. 65(4):467-85 PUBMEDID:17610133
Huang, J; Wang, J; Zhang, H. 2005. Rice ZFP15 gene encoding for a novel C2H2-type zinc finger protein lacking DLN box, is regulated by spike development but not by abiotic stresses. Mol. Biol. Rep. 32(3):177-83 PUBMEDID:16172918