Plant Transcription factor database - Universität Potsdam
version: 3.0

Physcomitrella patens C2H2 Family

Description

Englbrecht et al. 2004: C2H2 zinc fingers (ZF) display a wide range of functions, from DNA or RNA binding to the involvement in protein-protein interactions. Therefore ZFPs not only act in transcriptional regulation, either directly or through site-specific modification and/or regulation of chromatin, but also participate in RNA metabolism and in other cellular functions that probably require specific protein contacts of the ZF domain.

Members of this family
  SHOULD possess zf-C2H2 domain
  SHOULD NOT possess PHD domain

Domain alignments

This family is also present in:

References

There are 59 gene models in this family



Gene modelDescriptionDomains
102371 fgenesh1_pg.scaffold_577000001 AT_hook zf-C2H2
111123 e_gw1.1.457.1 zf-C2H2
111437 e_gw1.2.480.1 zf-C2H2
113203 e_gw1.6.268.1 zf-C2H2
114282 e_gw1.9.121.1 G-patch zf-C2H2
114845 e_gw1.11.219.1 zf-C2H2
115881 e_gw1.14.264.1 zf-C2H2
120702 e_gw1.33.154.1 zf-C2H2
121068 e_gw1.34.233.1 zf-C2H2
122119 e_gw1.38.207.1 zf-C2H2
130648 e_gw1.83.96.1 zf-AN1 zf-C2H2
142097 e_gw1.186.49.1 zf-C2H2
143486 e_gw1.203.23.1 zf-C2H2
149788 e_gw1.304.45.1 zf-C2H2
15031 gw1.43.55.1 zf-C2H2
158891 estExt_fgenesh1_pg.C_70201 zf-C2H2
159199 estExt_fgenesh1_pg.C_100106 zf-C2H2
159544 estExt_fgenesh1_pg.C_130207 zf-C2H2
161460 estExt_fgenesh1_pg.C_330060 zf-C2H2
162343 estExt_fgenesh1_pg.C_420046 JmjC JmjN zf-C2H2
163083 estExt_fgenesh1_pg.C_510146 zf-C2H2
163270 estExt_fgenesh1_pg.C_540035 zf-C2H2 zf-CCCH
163703 estExt_fgenesh1_pg.C_590095 zf-C2H2
163971 estExt_fgenesh1_pg.C_630029 zf-C2H2
166815 estExt_fgenesh1_pg.C_1250039 zf-C2H2
167193 estExt_fgenesh1_pg.C_1380108 JmjC JmjN zf-C2H2
168056 estExt_fgenesh1_pg.C_1650002 zf-C2H2
171319 estExt_fgenesh1_pg.C_2860015 zf-C2H2
171626 estExt_fgenesh1_pg.C_3030026 zf-C2H2
17198 gw1.162.63.1 zf-C2H2
172979 estExt_fgenesh1_pg.C_4000009 zf-C2H2
173068 estExt_fgenesh1_pg.C_4070009 zf-C2H2
18030 gw1.159.41.1 zf-C2H2
186998 estExt_gwp_gw1.C_1000024 Pre-SET SET zf-C2H2
192057 estExt_gwp_gw1.C_1730005 zf-C2H2
197420 estExt_gwp_gw1.C_2940004 zf-C2H2
198425 estExt_gwp_gw1.C_3250048 Pre-SET SET zf-C2H2
221736 estExt_Genewise1.C_2180024 zf-C2H2
229758 fgenesh2_pg.scaffold_78000088 zf-C2H2
230875 fgenesh2_pg.scaffold_113000017 zf-C2H2
233176 estExt_fgenesh2_pg.C_720102 DnaJ zf-C2H2
233271 estExt_fgenesh2_pg.C_750086 DUF966 zf-C2H2
24318 gw1.10.88.1 zf-C2H2
26742 gw1.37.119.1 zf-C2H2
26749 gw1.13.180.1 zf-C2H2
34788 gw1.42.165.1 zf-C2H2
36125 gw1.359.34.1 zf-C2H2
6092 gw1.254.15.1 zf-C2H2
61926 fgenesh1_pm.scaffold_495000003 zf-C2H2
64076 fgenesh1_pg.scaffold_1000450 zf-C2H2
72964 fgenesh1_pg.scaffold_39000134 zf-C2H2
79870 fgenesh1_pg.scaffold_82000037 zf-C2H2
81774 fgenesh1_pg.scaffold_98000025 zf-C2H2
87880 fgenesh1_pg.scaffold_162000076 zf-C2H2
90023 fgenesh1_pg.scaffold_191000049 zf-C2H2
90051 fgenesh1_pg.scaffold_192000005 zf-C2H2
91435 fgenesh1_pg.scaffold_210000038 zf-C2H2
91443 fgenesh1_pg.scaffold_210000046 zf-C2H2
97961 fgenesh1_pg.scaffold_339000011 zf-C2H2

General references

Ciftci-Yilmaz, S; Mittler, R. 2008. The zinc finger network of plants. Cell. Mol. Life Sci. 65(7-8):1150-60 PUBMEDID:18193167
Iuchi, S. 2001. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4):625-35 PUBMEDID:11361095
Takatsuji, H. 1999. Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol. Biol. 39(6):1073-8 PUBMEDID:10380795