Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa C2H2 Family

Description

Englbrecht et al. 2004: C2H2 zinc fingers (ZF) display a wide range of functions, from DNA or RNA binding to the involvement in protein-protein interactions. Therefore ZFPs not only act in transcriptional regulation, either directly or through site-specific modification and/or regulation of chromatin, but also participate in RNA metabolism and in other cellular functions that probably require specific protein contacts of the ZF domain.

Members of this family
  SHOULD possess zf-C2H2 domain
  SHOULD NOT possess PHD domain

Domain alignments

This family is also present in:

References

There are 113 gene models in this family



Gene modelDescriptionDomains
173240 gw1.I.1840.1 zf-C2H2
175486 gw1.I.4086.1 zf-C2H2
178852 gw1.I.7452.1 zf-C2H2
196418 gw1.IV.1507.1 zf-C2H2
200378 gw1.IX.843.1 zf-C2H2
202805 gw1.IX.3270.1 zf-C2H2
217468 gw1.VII.1773.1 zf-C2H2
218972 gw1.VII.3277.1 zf-C2H2
225639 gw1.X.336.1 zf-C2H2
243934 gw1.XIV.677.1 zf-C2H2
253984 gw1.XV.3420.1 zf-C2H2
256847 gw1.XVI.2786.1 zf-C2H2
261273 gw1.XVIII.1814.1 zf-C2H2
274032 gw1.163.66.1 zf-C2H2
274037 gw1.163.71.1 zf-C2H2
282244 gw1.28.818.1 zf-C2H2
287111 gw1.40.871.1 zf-C2H2
287860 gw1.41.345.1 zf-C2H2
410422 gw1.II.1757.1 zf-C2H2
410487 gw1.II.1822.1 zf-C2H2
411238 gw1.II.2573.1 zf-C2H2
413115 gw1.III.218.1 zf-C2H2
413313 gw1.III.416.1 zf-C2H2
415831 gw1.VI.204.1 zf-C2H2
421421 gw1.VIII.2849.1 zf-C2H2
423082 gw1.XII.1542.1 zf-C2H2
549842 eugene3.00012283 zf-C2H2
551066 eugene3.00020381 zf-C2H2
552010 eugene3.00021325 zf-C2H2
552499 eugene3.00021814 zf-C2H2
555266 eugene3.00031899 zf-C2H2
555999 eugene3.00040712 zf-C2H2
557503 eugene3.00090763 zf-C2H2
557948 eugene3.00091208 zf-C2H2
558107 eugene3.00091367 zf-C2H2
559176 eugene3.00050791 MOZ_SAS zf-C2H2
559606 eugene3.00051221 zf-C2H2
560802 eugene3.00060761 zf-C2H2
563672 eugene3.00080267 zf-C2H2
564550 eugene3.00081145 zf-C2H2
565404 eugene3.00081999 zf-C2H2
566362 eugene3.00100920 zf-C2H2
566407 eugene3.00100965 zf-C2H2
566778 eugene3.00101336 zf-C2H2
566941 eugene3.00101499 zf-C2H2
569394 eugene3.00120047 zf-C2H2
576084 eugene3.00160219 zf-C2H2
576790 eugene3.00160925 zf-C2H2
577730 eugene3.00170472 zf-C2H2
578878 eugene3.00181102 zf-C2H2
580814 eugene3.01230104 zf-C2H2
583672 eugene3.01520076 zf-C2H2
585117 eugene3.17130001 zf-C2H2
589563 eugene3.00280299 zf-C2H2
589863 eugene3.00290046 zf-C2H2
590004 eugene3.00290187 zf-C2H2
594620 eugene3.00640208 zf-C2H2
641083 grail3.0068005401 zf-C2H2
649076 grail3.0001016501 zf-C2H2
650539 grail3.0001138901 zf-C2H2
657009 grail3.0010066001 zf-C2H2
659644 grail3.0022022601 zf-C2H2
662091 grail3.0015022001 zf-C2H2
667900 grail3.0025004501 zf-C2H2
671662 grail3.0133001302 zf-C2H2
678093 grail3.0041005101 zf-C2H2
681001 grail3.0086000101 zf-C2H2
706232 estExt_Genewise1_v1.C_LG_I1393 zf-C2H2
708551 estExt_Genewise1_v1.C_LG_I7229 zf-C2H2
716193 estExt_Genewise1_v1.C_LG_V3716 zf-C2H2
725017 estExt_Genewise1_v1.C_LG_X2718 zf-C2H2
730802 estExt_Genewise1_v1.C_LG_XIV0633 zf-C2H2
738809 estExt_Genewise1_v1.C_LG_XIX2010 zf-C2H2
752776 fgenesh4_pg.C_LG_I002379 zf-C2H2
754644 fgenesh4_pg.C_LG_II000824 MOZ_SAS zf-C2H2
754724 fgenesh4_pg.C_LG_II000904 AT_hook zf-C2H2
755135 fgenesh4_pg.C_LG_II001315 zf-C2H2
756017 fgenesh4_pg.C_LG_II002197 zf-C2H2
757026 fgenesh4_pg.C_LG_III000568 zf-C2H2
758202 fgenesh4_pg.C_LG_III001744 zf-C2H2
759585 fgenesh4_pg.C_LG_IV001213 zf-C2H2
760780 fgenesh4_pg.C_LG_V000832 AT_hook MBD zf-C2H2
761311 fgenesh4_pg.C_LG_V001363 zf-C2H2
761937 fgenesh4_pg.C_LG_VI000247 zf-C2H2
762400 fgenesh4_pg.C_LG_VI000710 zf-C2H2
763241 fgenesh4_pg.C_LG_VI001551 zf-C2H2
765478 fgenesh4_pg.C_LG_VIII000492 zf-C2H2
765816 fgenesh4_pg.C_LG_VIII000830 zf-C2H2
766444 fgenesh4_pg.C_LG_VIII001458 zf-C2H2
766445 fgenesh4_pg.C_LG_VIII001459 zf-C2H2
768155 fgenesh4_pg.C_LG_IX001206 zf-C2H2
768865 fgenesh4_pg.C_LG_X000355 zf-C2H2
769200 fgenesh4_pg.C_LG_X000690 zf-C2H2
769201 fgenesh4_pg.C_LG_X000691 zf-C2H2
770597 fgenesh4_pg.C_LG_X002087 zf-C2H2
774203 fgenesh4_pg.C_LG_XIV000113 zf-C2H2
774734 fgenesh4_pg.C_LG_XIV000644 zf-C2H2
777162 fgenesh4_pg.C_LG_XVI000404 zf-C2H2
777686 fgenesh4_pg.C_LG_XVI000928 zf-C2H2
779696 fgenesh4_pg.C_LG_XVIII001064 zf-C2H2
780645 fgenesh4_pg.C_LG_XIX000784 zf-C2H2
783705 fgenesh4_pg.C_scaffold_118000014 zf-C2H2
783967 fgenesh4_pg.C_scaffold_121000003 zf-C2H2
785103 fgenesh4_pg.C_scaffold_140000010 zf-C2H2
796265 fgenesh4_pg.C_scaffold_29000023 zf-C2H2
796605 fgenesh4_pg.C_scaffold_29000363 zf-C2H2
796816 fgenesh4_pg.C_scaffold_57000195 zf-C2H2
801459 fgenesh4_pm.C_LG_V000551 zf-C2H2
803658 fgenesh4_pm.C_LG_VIII000613 zf-C2H2
803977 fgenesh4_pm.C_LG_IX000024 zf-C2H2
809281 fgenesh4_pm.C_LG_XVIII000299 zf-C2H2
830715 estExt_fgenesh4_pm.C_LG_III0155 zf-C2H2
834945 estExt_fgenesh4_pm.C_LG_XIV0431 UFD1 zf-C2H2

General references

Ciftci-Yilmaz, S; Mittler, R. 2008. The zinc finger network of plants. Cell. Mol. Life Sci. 65(7-8):1150-60 PUBMEDID:18193167
Iuchi, S. 2001. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4):625-35 PUBMEDID:11361095
Takatsuji, H. 1999. Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol. Biol. 39(6):1073-8 PUBMEDID:10380795