Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor C2H2 Family

Description

Englbrecht et al. 2004: C2H2 zinc fingers (ZF) display a wide range of functions, from DNA or RNA binding to the involvement in protein-protein interactions. Therefore ZFPs not only act in transcriptional regulation, either directly or through site-specific modification and/or regulation of chromatin, but also participate in RNA metabolism and in other cellular functions that probably require specific protein contacts of the ZF domain.

Members of this family
  SHOULD possess zf-C2H2 domain
  SHOULD NOT possess PHD domain

Domain alignments

This family is also present in:

References

There are 105 gene models in this family



Gene modelDescriptionDomains
127186 fgenesh1_pm.C_chr_4000489 zf-C2H2
143938 estExt_fgenesh1_pm.C_chr_31522 zf-C2H2
146672 estExt_fgenesh1_pm.C_chr_100099 zf-C2H2
147380 estExt_fgenesh1_kg.C_chr_10364 zf-C2H2
147381 estExt_fgenesh1_kg.C_chr_10365 zf-C2H2
147772 estExt_fgenesh1_kg.C_chr_20165 zf-C2H2
4131129 gw1.10.14437.1 zf-C2H2
4158543 gw1.4.17419.1 zf-C2H2
4161325 gw1.7.17676.1 zf-C2H2
4163170 gw1.3.19492.1 zf-C2H2
4754116 estExt_Genewise1.C_chr_310151 zf-C2H2
4756567 estExt_Genewise1.C_chr_46272 zf-C2H2
4766255 estExt_Genewise1.C_chr_85982 zf-C2H2
4782587 e_gw1.1.7525.1 zf-C2H2
4787731 e_gw1.2.17772.1 zf-C2H2
4789026 e_gw1.2.13412.1 zf-C2H2
4790239 e_gw1.2.18558.1 zf-C2H2
4796570 e_gw1.3.19841.1 JmjC JmjN zf-C2H2
4797633 e_gw1.3.18615.1 zf-C2H2
4803992 e_gw1.3.15409.1 zf-C2H2
4804757 e_gw1.3.2474.1 zf-C2H2
4844015 e_gw1.8.431.1 zf-C2H2
4857035 e_gw1.9.726.1 zf-C2H2
4867743 estExt_Genewise1Plus.C_chr_11450 zf-C2H2
4872411 estExt_Genewise1Plus.C_chr_111614 zf-C2H2
4876103 estExt_Genewise1Plus.C_chr_29890 zf-AN1 zf-C2H2
4888554 estExt_Genewise1Plus.C_chr_66789 zf-C2H2
4888671 estExt_Genewise1Plus.C_chr_66980 zf-C2H2
4963733 fgenesh1_pg.C_chr_1000335 zf-C2H2
4964582 fgenesh1_pg.C_chr_1001184 zf-C2H2
4966907 fgenesh1_pg.C_chr_1003509 zf-C2H2
4966908 fgenesh1_pg.C_chr_1003510 zf-C2H2
4966911 fgenesh1_pg.C_chr_1003513 zf-C2H2
4967565 fgenesh1_pg.C_chr_1004167 zf-C2H2
4967712 fgenesh1_pg.C_chr_1004314 zf-C2H2
4970882 fgenesh1_pg.C_chr_2002198 zf-C2H2
4970985 fgenesh1_pg.C_chr_2002301 zf-C2H2
4972897 fgenesh1_pg.C_chr_3000012 zf-C2H2
4975282 fgenesh1_pg.C_chr_3002397 zf-C2H2
4976599 fgenesh1_pg.C_chr_3003714 zf-C2H2
4976906 fgenesh1_pg.C_chr_3004021 zf-C2H2
4978770 fgenesh1_pg.C_chr_4001603 zf-C2H2
4980021 fgenesh1_pg.C_chr_4002854 zf-C2H2
4980538 fgenesh1_pg.C_chr_4003371 zf-C2H2
4980872 fgenesh1_pg.C_chr_5000232 zf-C2H2
4981139 fgenesh1_pg.C_chr_5000499 zf-C2H2
4981697 fgenesh1_pg.C_chr_5001057 zf-C2H2
4981699 fgenesh1_pg.C_chr_5001059 zf-C2H2
4983058 fgenesh1_pg.C_chr_5002418 zf-C2H2
4983205 fgenesh1_pg.C_chr_6000092 zf-C2H2
4984407 fgenesh1_pg.C_chr_6001294 zf-C2H2
4987506 fgenesh1_pg.C_chr_7001596 zf-C2H2
4987640 fgenesh1_pg.C_chr_7001730 zf-C2H2
4988203 fgenesh1_pg.C_chr_7002293 zf-C2H2
4990891 fgenesh1_pg.C_chr_9000619 zf-C2H2
4991097 fgenesh1_pg.C_chr_9000825 zf-C2H2
4995610 fgenesh1_pg.C_chr_10002787 zf-C2H2
4995735 fgenesh1_pg.C_scaffold_11000015 zf-C2H2
4996284 estExt_fgenesh1_pg.C_chr_10186 zf-C2H2
4997885 estExt_fgenesh1_pg.C_chr_13250 zf-C2H2
4998509 estExt_fgenesh1_pg.C_chr_14253 zf-C2H2
4998675 estExt_fgenesh1_pg.C_chr_14507 zf-C2H2
4999672 estExt_fgenesh1_pg.C_chr_21365 zf-C2H2
5000705 estExt_fgenesh1_pg.C_chr_23485 zf-C2H2
5000738 estExt_fgenesh1_pg.C_chr_23534 zf-C2H2
5001505 estExt_fgenesh1_pg.C_chr_30685 zf-C2H2
5005098 estExt_fgenesh1_pg.C_chr_43362 zf-C2H2
5005913 estExt_fgenesh1_pg.C_chr_52443 zf-C2H2
5005985 estExt_fgenesh1_pg.C_chr_60155 zf-C2H2
5006711 estExt_fgenesh1_pg.C_chr_61780 zf-C2H2
5007875 estExt_fgenesh1_pg.C_chr_71466 zf-C2H2
5008971 estExt_fgenesh1_pg.C_chr_81828 zf-C2H2
5009085 estExt_fgenesh1_pg.C_chr_90070 zf-C2H2
5028064 Sb01g003280 zf-C2H2
5029740 Sb01g031900 zf-C2H2
5029863 Sb01g034100 zf-C2H2
5030481 Sb01g047010 zf-C2H2
5032338 Sb10g031270 zf-C2H2
5032346 Sb02g000330 zf-C2H2
5032492 Sb02g002012 zf-C2H2
5033146 Sb02g009930 zf-C2H2
5033522 Sb02g020840 zf-C2H2
5033815 Sb02g024960 zf-C2H2
5034282 Sb02g032400 zf-C2H2
5034591 Sb02g038070 zf-C2H2
5034612 Sb02g038390 zf-C2H2
5035053 Sb03g002440 zf-C2H2
5035076 Sb03g002960 zf-C2H2
5036352 Sb03g029910 zf-C2H2
5036890 Sb03g039270 zf-C2H2
5037326 Sb04g000270 zf-C2H2
5041297 Sb06g001730 zf-C2H2
5042439 Sb06g026950 zf-C2H2
5043970 Sb07g024510 zf-C2H2
5044146 Sb07g027020 zf-C2H2
5044261 Sb07g028870 zf-C2H2
5046684 Sb09g022660 zf-C2H2
5051630 Sb02g032810 zf-C2H2
5054057 Sb03g040490 zf-C2H2
5055311 Sb04g023670 zf-C2H2
5055821 Sb04g032140 zf-C2H2
5058201 Sb06g033920 zf-C2H2
5058941 Sb07g024550 zf-C2H2
5060011 Sb09g002060 zf-C2H2
5060586 Sb09g021850 zf-C2H2

General references

Ciftci-Yilmaz, S; Mittler, R. 2008. The zinc finger network of plants. Cell. Mol. Life Sci. 65(7-8):1150-60 PUBMEDID:18193167
Iuchi, S. 2001. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4):625-35 PUBMEDID:11361095
Takatsuji, H. 1999. Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science. Plant Mol. Biol. 39(6):1073-8 PUBMEDID:10380795