Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 75 gene models in this family



Gene modelDescriptionDomains
313049 fgenesh1_pm.C_scaffold_1001829 zf-CCCH
313613 fgenesh1_pm.C_scaffold_1002393 zf-CCCH
317994 fgenesh1_pm.C_scaffold_3001010 KH_1 zf-CCCH
319845 fgenesh1_pm.C_scaffold_3002861 GYF zf-CCCH
321255 fgenesh1_pm.C_scaffold_4001312 zf-CCCH
323163 fgenesh1_pm.C_scaffold_5000707 zf-CCCH
325295 fgenesh1_pm.C_scaffold_6000515 KH_1 zf-CCCH
325766 fgenesh1_pm.C_scaffold_6000986 zf-CCCH
329122 fgenesh1_pm.C_scaffold_7001349 NUDIX WD40 zf-CCCH
337099 fgenesh1_pg.C_scaffold_1003664 HORMA tRNA-synt_1 zf-CCCH
344719 fgenesh1_pg.C_scaffold_4001061 RRM_1 zf-CCCH
345050 fgenesh1_pg.C_scaffold_4001392 zf-CCCH
347147 fgenesh1_pg.C_scaffold_5000539 RRM_1 zf-CCCH
358097 fgenesh1_pg.C_scaffold_8001884 RRM_1 zf-CCCH
470353 fgenesh2_kg.1__307__AT1G03790.1 zf-CCCH
470757 fgenesh2_kg.1__711__AT1G07360.1 RRM_1 zf-CCCH
471143 fgenesh2_kg.1__1097__AT1G10320.1 zf-CCCH
472211 fgenesh2_kg.1__2165__AT1G19860.1 zf-CCCH
472969 fgenesh2_kg.1__2923__AT1G27650.1 zf-CCCH
475777 fgenesh2_kg.2__907__AT1G66810.1 zf-CCCH
475938 fgenesh2_kg.2__1068__AT1G68200.1 zf-CCCH
476679 fgenesh2_kg.2__1809__AT1G75340.1 zf-CCCH
477525 fgenesh2_kg.3__226__AT3G02830.1 zf-CCCH
477944 fgenesh2_kg.3__645__AT3G06410.1 zf-CCCH
478149 fgenesh2_kg.3__850__AT3G08505.2 zf-C3HC4 zf-CCCH
478627 fgenesh2_kg.3__1328__AT3G12680.1 zf-CCCH
479452 fgenesh2_kg.3__2153__AT3G19360.1 zf-CCCH
480130 fgenesh2_kg.3__2831__AT2G05160.1 zf-CCCH
480442 fgenesh2_kg.3__3143__AT2G20280.1 zf-CCCH
480488 fgenesh2_kg.3__3189__AT2G19810.1 zf-CCCH
481343 fgenesh2_kg.4__403__AT2G24830.1 G-patch zf-CCCH
481444 fgenesh2_kg.4__504__AT2G25900.1 zf-CCCH
483950 fgenesh2_kg.4__3010__AT2G47680.1 HA2 Helicase_C zf-CCCH
484140 fgenesh2_kg.5__132__AT2G02160.1 zf-CCCH
485553 fgenesh2_kg.5__1545__AT3G51950.1 RRM_1 zf-CCCH
485672 fgenesh2_kg.5__1664__AT3G52980.1 zf-CCCH
486038 fgenesh2_kg.5__2030__AT3G55980.1 Ank zf-CCCH
487583 fgenesh2_kg.6__717__AT5G07500.1 zf-CCCH
488102 fgenesh2_kg.6__1236__AT5G12850.1 Ank zf-CCCH
488510 fgenesh2_kg.6__1644__AT5G16540.1 zf-CCCH
488738 fgenesh2_kg.6__1872__AT5G18550.1 zf-CCCH
491837 fgenesh2_kg.7__1270__AT4G29190.1 zf-CCCH
493888 fgenesh2_kg.7__3321__AT5G40880.1 WD40 zf-CCCH
494567 fgenesh2_kg.8__383__AT5G44260.1 zf-CCCH
494737 fgenesh2_kg.8__553__AT5G42820.1 zf-CCCH
495266 fgenesh2_kg.8__1082__AT5G51980.1 WD40 zf-CCCH
495780 fgenesh2_kg.8__1596__AT5G56900.2 CwfJ_C_1 CwfJ_C_2 zf-CCCH
495985 fgenesh2_kg.8__1801__AT5G58620.1 Ank zf-CCCH
496509 fgenesh2_kg.8__2325__AT5G63260.1 zf-CCCH
496979 fgenesh2_kg.8__2795__AT5G66270.1 zf-CCCH
855832 Al_scaffold_0039_1 zf-CCCH
868960 Al_scaffold_0004_1123 zf-CCCH
877838 Al_scaffold_0002_2432 zf-CCCH
878662 Al_scaffold_0001_429 zf-CCCH
882420 Al_scaffold_0001_4187 zf-CCCH
887320 scaffold_100114.1 zf-C3HC4 zf-CCCH
890483 scaffold_103277.1 zf-CCCH
890484 scaffold_103278.1 zf-CCCH
890485 scaffold_103279.1 zf-CCCH
890588 scaffold_103382.1 YTH zf-CCCH
890808 scaffold_103602.1 zf-CCCH
891632 scaffold_104426.1 zf-CCCH
898233 scaffold_302203.1 zf-CCCH
898633 scaffold_302603.1 zf-CCCH
901404 scaffold_400905.1 zf-CCCH
902470 scaffold_401971.1 zf-CCCH
904260 scaffold_403761.1 zf-CCCH
905943 scaffold_501647.1 RRM_1 zf-CCCH
906088 scaffold_501792.1 zf-CCCH
906461 scaffold_502165.1 AT_hook GYF Plus-3 SWIB zf-CCCH
907942 scaffold_503646.1 zf-C3HC4 zf-CCCH
910739 scaffold_602796.1 zf-CCCH zf-U1
916000 scaffold_703742.1 zf-CCCH
918852 scaffold_802252.1 zf-CCCH
920502 scaffold_30000002.1 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112