Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 85 gene models in this family



Gene modelDescriptionDomains
AT1G01350.1 nucleic acid binding zf-C3HC4 zf-CCCH
AT1G03790.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G04990.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G04990.2 zinc finger (CCCH-type) family protein zf-CCCH
AT1G07360.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT1G10320.1 U2 snRNP auxiliary factor-related zf-CCCH
AT1G19860.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G21570.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G27650.1 ATU2AF35A; RNA binding zf-CCCH
AT1G27650.2 ATU2AF35A zf-CCCH
AT1G29560.1 nucleic acid binding / zinc ion binding zf-CCCH
AT1G29560.2 nucleic acid binding / zinc ion binding zf-CCCH
AT1G29570.1 zinc finger protein-related zf-CCCH
AT1G29600.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G30460.1 ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding YTH zf-CCCH
AT1G30460.2 ATCPSF30/CPSF30 zf-CCCH
AT1G32360.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G48195.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G66810.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G68200.1 zinc finger (CCCH-type) family protein zf-CCCH
AT1G68200.2 zinc finger (CCCH-type) family protein zf-CCCH
AT1G75340.1 zinc finger (CCCH-type) family protein zf-CCCH
AT2G02160.1 zinc finger (CCCH-type) family protein zf-CCCH
AT2G05160.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT2G16470.1 zinc finger (CCCH-type) family protein / GYF domain-containing protein GYF zf-CCCH
AT2G19810.1 zinc finger (CCCH-type) family protein zf-CCCH
AT2G20280.1 zinc finger (CCCH-type) family protein zf-CCCH
AT2G24830.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein G-patch zf-CCCH
AT2G25900.1 ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor zf-CCCH
AT2G28450.1 zinc finger (CCCH-type) family protein zf-CCCH
AT2G29580.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT2G32930.1 ZFN2 (ZINC FINGER PROTEIN 2); nucleic acid binding zf-CCCH
AT2G33835.1 FES1 (FRIGIDA-ESSENTIAL 1); nucleic acid binding zf-CCCH
AT2G35430.1 zinc finger (CCCH-type) family protein zf-CCCH
AT2G40140.1 CZF1/ZFAR1; transcription factor Ank zf-CCCH
AT2G40140.2 CZF1/ZFAR1 Ank zf-CCCH
AT2G41900.1 zinc finger (CCCH-type) family protein Ank zf-CCCH
AT2G47680.1 zinc finger (CCCH type) helicase family protein Helicase_C zf-CCCH
AT2G47850.1 zinc finger (CCCH-type) family protein zf-CCCH
AT2G47850.2 zinc finger (CCCH-type) family protein zf-CCCH
AT2G47850.3 zinc finger (CCCH-type) family protein zf-CCCH
AT3G02830.1 ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding zf-CCCH
AT3G06410.1 nucleic acid binding zf-CCCH
AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein zf-C3HC4 zf-CCCH
AT3G08505.2 zinc finger (CCCH-type/C3HC4-type RING finger) family protein zf-C3HC4 zf-CCCH
AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein KH_1 zf-CCCH
AT3G12680.1 HUA1 (ENHANCER OF AG-4 1) zf-CCCH
AT3G18640.1 zinc finger protein-related zf-CCCH
AT3G19360.1 zinc finger (CCCH-type) family protein zf-CCCH
AT3G21810.1 zinc finger (CCCH-type) family protein zf-CCCH
AT3G27700.1 RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT3G27700.2 RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT3G44785.1 U2AF splicing factor subunit, putative / U2 auxiliary factor 38 kDa subunit, putative zf-CCCH
AT3G47120.1 RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT3G48440.1 zinc finger (CCCH-type) family protein zf-CCCH
AT3G51120.1 zinc finger (CCCH-type) family protein AT_hook GYF Plus-3 SWIB zf-CCCH
AT3G51950.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT3G51950.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein RRM_1 zf-CCCH
AT3G55980.1 zinc finger (CCCH-type) family protein Ank zf-CCCH
AT4G25440.1 ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding WD40 zf-CCCH
AT4G29190.1 zinc finger (CCCH-type) family protein zf-CCCH
AT5G06420.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein zf-C3HC4 zf-CCCH
AT5G06420.2 zinc finger (CCCH-type/C3HC4-type RING finger) family protein zf-C3HC4 zf-CCCH
AT5G06770.1 KH domain-containing protein / zinc finger (CCCH type) family protein KH_1 zf-CCCH
AT5G07060.1 zinc finger (CCCH-type) family protein zf-CCCH
AT5G07500.1 PEI1; nucleic acid binding / transcription factor zf-CCCH
AT5G12440.1 zinc finger (CCCH-type) family protein zf-CCCH
AT5G12850.1 zinc finger (CCCH-type) family protein Ank zf-CCCH
AT5G16540.1 ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding zf-CCCH
AT5G16540.2 ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding zf-CCCH
AT5G16540.3 ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding zf-CCCH
AT5G18550.1 nucleic acid binding zf-CCCH
AT5G40880.1 WD-40 repeat family protein / zfwd3 protein (ZFWD3) WD40 zf-CCCH
AT5G42820.1 ATU2AF35B; RNA binding zf-CCCH
AT5G42820.2 ATU2AF35B; RNA binding zf-CCCH
AT5G44260.1 zinc finger (CCCH-type) family protein zf-CCCH
AT5G49200.1 WD-40 repeat family protein / zfwd4 protein (ZFWD4) WD40 zf-CCCH
AT5G51980.1 WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative WD40 zf-CCCH
AT5G51980.2 WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative WD40 zf-CCCH
AT5G56900.1 CwfJ-like family protein / zinc finger (CCCH-type) family protein CwfJ_C_1 CwfJ_C_2 zf-CCCH
AT5G56900.2 CwfJ-like family protein / zinc finger (CCCH-type) family protein CwfJ_C_1 CwfJ_C_2 zf-CCCH
AT5G56930.1 EMB1789 (EMBRYO DEFECTIVE 1789); nucleic acid binding zf-CCCH
AT5G58620.1 zinc finger (CCCH-type) family protein Ank zf-CCCH
AT5G63260.1 zinc finger (CCCH-type) family protein zf-CCCH
AT5G66270.1 zinc finger (CCCH-type) family protein zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112

Specific references

Wang, D; Guo, Y; Wu, C; Yang, G; Li, Y; Zheng, C. 2008. Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics 9:44 PUBMEDID:18221561