Plant Transcription factor database - Universität Potsdam
version: 3.0

Carica papaya C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 45 gene models in this family



Gene modelDescriptionDomains
evm.TU.supercontig_0.10 zf-CCCH
evm.TU.supercontig_1.267 zf-CCCH
evm.TU.supercontig_1057.1 Ank RRM_1 zf-CCCH
evm.TU.supercontig_108.53 RRM_1 zf-CCCH
evm.TU.supercontig_112.32 RRM_1 zf-CCCH
evm.TU.supercontig_112.66 zf-CCCH
evm.TU.supercontig_112.7 Ank zf-CCCH
evm.TU.supercontig_1156.4 zf-CCCH
evm.TU.supercontig_118.21 zf-CCCH
evm.TU.supercontig_118.23 zf-CCCH
evm.TU.supercontig_13.232 zf-CCCH
evm.TU.supercontig_1427.1 zf-CCCH
evm.TU.supercontig_148.42 G-patch zf-CCCH
evm.TU.supercontig_150.6 zf-CCCH
evm.TU.supercontig_17.92 zf-CCCH
evm.TU.supercontig_170.23 zf-CCCH
evm.TU.supercontig_173.38 zf-CCCH
evm.TU.supercontig_197.21 zf-CCCH
evm.TU.supercontig_211.13 RRM_1 zf-CCCH
evm.TU.supercontig_2216.1 zf-CCCH
evm.TU.supercontig_2267.1 zf-CCCH
evm.TU.supercontig_235.4 KH_1 zf-CCCH
evm.TU.supercontig_235.5 KH_1 zf-CCCH
evm.TU.supercontig_25.153 SAP zf-CCCH
evm.TU.supercontig_26.22 DUF1605 Helicase_C S1 zf-CCCH
evm.TU.supercontig_273.5 zf-C3HC4 zf-CCCH
evm.TU.supercontig_346.1 zf-CCCH
evm.TU.supercontig_4.210 WD40 zf-CCCH
evm.TU.supercontig_4.51 zf-CCCH
evm.TU.supercontig_42.119 zf-CCCH
evm.TU.supercontig_46.116 zf-CCCH
evm.TU.supercontig_47.47 zf-CCCH
evm.TU.supercontig_6.209 Plus-3 SWIB zf-CCCH
evm.TU.supercontig_61.35 CwfJ_C_1 CwfJ_C_2 zf-CCCH
evm.TU.supercontig_75.53 zf-CCCH
evm.TU.supercontig_8.228 zf-CCCH
evm.TU.supercontig_84.23 zf-CCCH
evm.TU.supercontig_84.24 zf-CCCH
evm.TU.supercontig_898.5 zf-CCCH
evm.TU.supercontig_9.180 zf-CCCH
evm.TU.supercontig_9.260 Helicase_C zf-CCCH
evm.TU.supercontig_90.19 WD40 zf-CCCH
evm.TU.supercontig_90.53 zf-CCCH
evm.TU.supercontig_92.23 Ank zf-CCCH
evm.TU.supercontig_94.68 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112