Plant Transcription factor database - Universität Potsdam
version: 3.0

Chlamydomonas reinhardtii C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 22 gene models in this family



Gene modelDescriptionDomains
105687 e_gwH.38.105.1 zf-C3HC4 zf-CCCH
119209 e_gwW.27.84.1 zf-CCCH
134186 estExt_gwp_1W.C_30096 zf-CCCH
142476 Chlre2_kg.scaffold_3000449 zf-CCCH
146239 Chlre2_kg.scaffold_1000063 zf-CCCH
149876 Chlre2_kg.scaffold_27000145 Ank zf-CCCH
153922 Chlre2_kg.scaffold_69000044 TFIIS zf-CCCH
182666 estExt_fgenesh2_kg.C_20019 zf-CCCH
194555 estExt_fgenesh2_pg.C_690037 zf-CCCH
205729 OVA_estExt_fgenesh2_pg.C_100352 zf-CCCH
22211 fgenesh1_pg.C_scaffold_94000028 WW zf-CCCH
292744 au.g10607_t1 zf-CCCH
294095 au.g11871_t1 zf-CCCH
323313 pg.chromosome_1_#_102 PP2C zf-CCCH
390321 pasa_Sanger_mRNA31209 zf-CCCH
393724 pasa_Sanger_mRNA6206 zf-CCCH
406697 pasa_Sanger_mRNA2447 zf-CCCH
413911 pasa_Sanger_mRNA20361 zf-CCCH
417182 pasa_Sanger_mRNA19883 RRM_1 zf-CCCH
419111 pasa_Sanger_mRNA21745 Pericardin_rpt zf-CCCH
421287 pasa_Sanger_mRNA5467 zf-CCCH
424240 pasa_Sanger_mRNA7281 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112