Plant Transcription factor database - Universität Potsdam
version: 3.0

Micromonas pusilla CCMP1545 C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 20 gene models in this family



Gene modelDescriptionDomains
13206 e_gw1.1.432.1 zf-C3HC4 zf-CCCH
15400 e_gw1.3.368.1 Pkinase Pkinase_Tyr Ribonuc_2-5A zf-CCCH
15546 e_gw1.3.485.1 zf-CCCH
25397 estExt_Genewise1.C_20971 zf-CCCH
36315 estExt_Genewise1Plus.C_140110 zf-CCCH
39810 fgenesh1_pg.C_scaffold_5000239 zf-CCCH
40120 fgenesh1_pg.C_scaffold_6000097 DTW zf-CCCH
47031 estExt_fgenesh1_pg.C_40213 zf-CCCH
4866 gw1.3.509.1 zf-CCCH
4888 gw1.9.306.1 zf-C3HC4 zf-CCCH
51775 EuGene.0000110297 zf-CCCH
52141 EuGene.0000120206 zf-CCCH
52395 EuGene.0000120460 zf-CCCH
56236 EuGene.0000030390 zf-CCCH
57418 EuGene.0000040544 zf-CCCH
57902 EuGene.0000050207 zf-CCCH
59323 EuGene.0000070172 zf-CCCH
63702 est_orfs.14_2685_4279652:1 tRNA_anti zf-CCCH
67715 est_orfs.18_6698_4273011:2 Ank zf-CCCH
9855 gw1.1.1133.1 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112