Plant Transcription factor database - Universität Potsdam
version: 3.0

Ostreococcus lucimarinus C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 24 gene models in this family



Gene modelDescriptionDomains
10510 gwEuk.5.648.1 zf-CCCH
13306 fgenesh1_pm.C_Chr_15000025 zf-CCCH
15241 fgenesh1_pg.C_Chr_4000393 tRNA_anti zf-CCCH
16190 fgenesh1_pg.C_Chr_7000234 FtsJ zf-CCCH
16436 fgenesh1_pg.C_Chr_8000123 zf-CCCH
23918 estExt_fgenesh1_pg.C_Chr_10295 Nucleoporin2 zf-CCCH
24342 estExt_fgenesh1_pg.C_Chr_40023 Ank zf-CCCH
24522 estExt_fgenesh1_pg.C_Chr_50096 zf-CCCH
27930 eugene.1500010252 zf-CCCH
28805 eugene.0100010199 zf-CCCH
30295 eugene.0200010482 zf-CCCH
30343 eugene.0300010019 zf-CCCH
30694 eugene.0300010370 KH_1 zf-CCCH
31349 eugene.0400010425 zf-CCCH
31465 eugene.0500010002 Methyltransf_4 PPR zf-CCCH
32335 eugene.0600010394 zf-CCCH
38590 e_gwEuk.5.273.1 zf-CCCH
48805 estExt_Genewise_ext.C_Chr_20463 Pkinase Ribonuc_2-5A zf-CCCH
5242 gwEuk.12.222.1 zf-CCCH
86070 ost_01_008_087 Dus zf-CCCH
86816 ost_03_020_045 zf-CCCH
92497 ost_03_020_039 zf-CCCH
93911 ost_17_001_063 KH_1 zf-CCCH
9818 gwEuk.3.753.1 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112