Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 71 gene models in this family



Gene modelDescriptionDomains
OsIBCD000494 Chr01_756,840,,,1,840, zf-CCCH
OsIBCD000498 Chr01_761,1650,,,1,1650, ShK zf-CCCH
OsIBCD001007 Chr01_1469,2160,,,1,2160, Pkinase zf-CCCH zf-U1
OsIBCD001039 Chr01_1518,3489,,,1,3489, Helicase_C LSM zf-CCCH
OsIBCD001040 Chr01_1522,1443,,,1,1443, zf-CCCH
OsIBCD001046 Chr01_1530,975,,,1,975, zf-CCCH
OsIBCD002365 Chr01_3766,2097,,,1,2097, zf-CCCH
OsIBCD002714 Chr01_4295,1002,,,1,1002, zf-CCCH
OsIBCD002850 Chr01_4497,792,,,1,792, zf-CCCH
OsIBCD002853 Chr01_4502,798,,,1,798, zf-CCCH
OsIBCD003808 Chr01_5851,1224,,,1,1224, zf-CCCH
OsIBCD004293 Chr01_6578,1260,,,1,1260, zf-CCCH
OsIBCD005143 Chr02_631,1398,,,1,1398, zf-CCCH
OsIBCD005387 Chr02_977,903,,,1,903, KH_1 zf-CCCH
OsIBCD005986 Chr02_1896,1206,,,1,1206, zf-CCCH
OsIBCD006863 Chr02_3488,2037,,,1,2037, zf-CCCH
OsIBCD007550 Chr02_4517,1188,,,1,1188, WD40 zf-CCCH
OsIBCD008231 Chr02_5497,1515,,,1,1515, G-patch zf-CCCH
OsIBCD008617 Chr03_131,5232,,,1,5232, AT_hook GYF Plus-3 SWIB zf-CCCH
OsIBCD009834 Chr03_1814,1284,,,1,1284, zf-CCCH
OsIBCD010014 Chr03_2066,2148,,,1,2148, zf-CCCH
OsIBCD010015 Chr03_2067,2013,,,1,2013, zf-CCCH
OsIBCD012479 Chr03_6052,969,,,1,969, zf-CCCH
OsIBCD012821 Chr04_48,957,,,1,957, zf-CCCH
OsIBCD012899 Chr04_194,2058,,,1,2058, Dus zf-CCCH
OsIBCD014164 Chr04_2557,1887,,,1,1887, RRM_1 zf-CCCH
OsIBCD014414 Chr04_2921,849,,,1,849, zf-CCCH
OsIBCD015308 Chr04_4188,4812,,,1,4812, RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 WD40 zf-CCCH
OsIBCD015908 Chr04_5024,1422,,,1,1422, zf-CCCH
OsIBCD015927 Chr04_5053,1440,,,1,1440, KH_1 zf-CCCH
OsIBCD015972 Chr04_5116,2136,,,1,2136, zf-CCCH
OsIBCD016628 Chr05_729,1497,,,1,1497, zf-CCCH
OsIBCD018485 Chr05_3921,1878,,,1,1878, zf-CCCH
OsIBCD018890 Chr05_4508,927,,,1,927, zf-CCCH
OsIBCD019557 Chr06_696,3564,,,1,3564, Pkinase Pkinase_Tyr RRM_1 zf-CCCH
OsIBCD020365 Chr06_1960,1191,,,1,1191, zf-C3HC4 zf-CCCH
OsIBCD020881 Chr06_3000,1887,,,1,1887, MIF4G zf-CCCH
OsIBCD020884 Chr06_3004,2748,,,1,2748, MIF4G zf-CCCH
OsIBCD021408 Chr06_3856,924,,,1,924, KH_1 zf-CCCH
OsIBCD021518 Chr06_4032,432,,,1,432, zf-CCCH
OsIBCD021519 Chr06_4037,5982,,,1,5982, zf-CCCH
OsIBCD021780 Chr06_4421,1632,,,1,1632, YTH zf-CCCH
OsIBCD021814 Chr06_4471,1068,,,1,1068, zf-CCCH
OsIBCD021953 Chr06_4668,1086,,,1,1086, zf-CCCH
OsIBCD022304 Chr07_331,1434,,,1,1434, zf-CCCH
OsIBCD023032 Chr07_1595,1461,,,1,1461, RRM_1 zf-CCCH
OsIBCD024019 Chr07_3283,1299,,,1,1299, zf-CCCH
OsIBCD024623 Chr07_4160,2166,,,1,2166, zf-CCCH
OsIBCD024868 Chr08_240,1824,,,1,1824, zf-CCCH
OsIBCD024921 Chr08_318,2883,,,1,2883, zf-CCCH
OsIBCD025051 Chr08_535,1104,,,1,1104, zf-CCCH
OsIBCD026933 Chr08_3841,1809,,,1,1809, zf-CCCH
OsIBCD028272 Chr09_1534,1053,,,1,1053, CwfJ_C_1 CwfJ_C_2 zf-CCCH
OsIBCD029194 Chr09_2951,5340,,,1,5340, GYF Plus-3 SWIB zf-CCCH
OsIBCD029578 Chr10_180,2670,,,1,2670, FAD_binding_2 Pyr_redox_2 Succ_DH_flav_C zf-CCCH
OsIBCD030441 Chr10_1723,1941,,,1,1941, SAP zf-CCCH
OsIBCD031181 Chr10_2866,5046,,,1,5046, AT_hook GYF Plus-3 SWIB zf-CCCH
OsIBCD032767 Chr11_1977,1092,,,1,1092, zf-CCCH
OsIBCD034558 Chr12_1286,1599,,,1,1599, zf-CCCH
OsIBCD034663 Chr12_1457,1188,,,1,1188, zf-CCCH
OsIBCD036001 Chr01_900,1161,,,1,1161, zf-CCCH
OsIBCD036823 Chr01_5045,678,,,1,678, zf-CCCH
OsIBCD039344 Chr03_4944,2250,,,1,2250, Ank zf-CCCH
OsIBCD040666 Chr05_267,1740,,,1,1740, Ank zf-CCCH
OsIBCD040799 Chr05_908,1215,,,1,1215, zf-CCCH
OsIBCD041390 Chr05_4184,768,,,1,768, zf-CCCH
OsIBCD041501 Chr05_4634,1164,,,1,1164, zf-CCCH
OsIBCD042604 Chr07_326,1167,,,1,1167, zf-CCCH
OsIBCD043155 Chr07_3153,2016,,,1,2016, Ank zf-CCCH
OsIBCD044741 Chr09_2651,873,,,1,873, zf-CCCH
OsIBSD047928 Supscaffold141_2,753,,,1,753, zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112