Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 109 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g07930.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g09620.1 zinc finger/CCCH transcription factor, putative, expressed zf-CCCH
LOC_Os01g09620.2 zinc finger/CCCH transcription factor, putative, expressed zf-CCCH
LOC_Os01g14870.1 zinc finger matrin-type protein 5, putative, expressed zf-CCCH zf-U1
LOC_Os01g15300.1 zinc finger helicase family protein, putative, expressed Helicase_C zf-CCCH
LOC_Os01g15300.2 zinc finger helicase family protein, putative, expressed Helicase_C zf-CCCH
LOC_Os01g15350.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g15460.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g15460.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g15460.3 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g39100.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g42970.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g42970.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g45730.1 zinc finger C-x8-C-x5-C-x3-H type family protein zf-CCCH
LOC_Os01g53650.1 zinc finger CCCH type family protein, putative, expressed zf-CCCH
LOC_Os01g61830.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g68860.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g68860.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os01g68860.3 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os02g06584.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os02g06584.3 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os02g06584.4 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os02g10080.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed KH_1 zf-CCCH
LOC_Os02g10080.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed KH_1 zf-CCCH
LOC_Os02g19804.1 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed zf-C3HC4 zf-CCCH
LOC_Os02g35150.1 splicing factor U2AF, putative, expressed zf-CCCH
LOC_Os02g45480.1 nucleic acid binding protein, putative, expressed WD40 zf-CCCH
LOC_Os02g45480.2 nucleic acid binding protein, putative, expressed WD40 zf-CCCH
LOC_Os02g45480.3 nucleic acid binding protein, putative, expressed WD40 zf-CCCH
LOC_Os02g55000.1 zinc finger CCCH-type with G patch domain-containing protein, putative, expressed G-patch zf-CCCH
LOC_Os02g58440.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os03g02160.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os03g02160.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os03g02160.3 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os03g18950.1 zinc finger C-x8-C-x5-C-x3-H type family protein zf-CCCH
LOC_Os03g21140.1 RNA-binding zinc finger protein, putative, expressed zf-CCCH
LOC_Os03g21140.2 RNA-binding zinc finger protein, putative, expressed zf-CCCH
LOC_Os03g21160.1 RNA-binding zinc finger protein, putative, expressed zf-CCCH
LOC_Os03g21160.2 RNA-binding zinc finger protein, putative, expressed zf-CCCH
LOC_Os03g49170.1 zinc finger family protein, putative, expressed Ank zf-CCCH
LOC_Os03g49170.3 zinc finger family protein, putative, expressed Ank zf-CCCH
LOC_Os03g61110.1 RNA-binding motif protein, putative, expressed RRM_1 zf-CCCH
LOC_Os04g01480.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os04g02730.1 tRNA-dihydrouridine synthase 3-like, putative, expressed Dus zf-CCCH
LOC_Os04g32340.1 RNA-binding motif protein, putative, expressed RRM_1 zf-CCCH
LOC_Os04g35800.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os04g41060.1 zinc finger C-x8-C-x5-C-x3-H type family protein zf-CCCH
LOC_Os04g48375.1 WD domain, G-beta repeat domain containing protein WD40 zf-CCCH
LOC_Os04g56750.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os04g57010.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed KH_1 zf-CCCH
LOC_Os04g57010.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed KH_1 zf-CCCH
LOC_Os04g57600.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os05g03760.1 zinc finger family protein, putative, expressed Ank zf-CCCH
LOC_Os05g08400.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os05g10670.1 zinc finger CCCH type family protein, putative, expressed zf-CCCH
LOC_Os05g41790.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os05g45020.1 zinc finger/CCCH transcription factor, putative, expressed zf-CCCH
LOC_Os05g48960.1 splicing factor U2AF, putative, expressed zf-CCCH
LOC_Os05g48960.2 splicing factor U2AF, putative, expressed zf-CCCH
LOC_Os05g48960.3 splicing factor U2AF, putative, expressed zf-CCCH
LOC_Os05g48960.4 splicing factor U2AF, putative, expressed zf-CCCH
LOC_Os05g50080.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os06g07350.1 RNA-binding motif protein, putative, expressed RRM_1 zf-CCCH
LOC_Os06g21390.1 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed zf-C3HC4 zf-CCCH
LOC_Os06g21390.2 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed zf-C3HC4 zf-CCCH
LOC_Os06g21390.3 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed zf-C3HC4 zf-CCCH
LOC_Os06g21390.4 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed zf-C3HC4 zf-CCCH
LOC_Os06g32720.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os06g32860.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed MIF4G zf-CCCH
LOC_Os06g32860.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed MIF4G zf-CCCH
LOC_Os06g41384.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed KH_1 zf-CCCH
LOC_Os06g41384.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed KH_1 zf-CCCH
LOC_Os06g43120.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os06g46400.1 ATCPSF30/CPSF30, putative, expressed YTH zf-CCCH
LOC_Os06g46890.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os06g49080.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os07g04580.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os07g04650.1 zinc finger C-x8-C-x5-C-x3-H type family protein zf-CCCH
LOC_Os07g18050.1 RNA-binding motif protein, putative, expressed RRM_1 zf-CCCH
LOC_Os07g38090.1 zinc finger family protein, putative, expressed Ank zf-CCCH
LOC_Os07g38090.2 zinc finger family protein, putative, expressed Ank zf-CCCH
LOC_Os07g39440.1 zinc finger family protein, putative zf-CCCH
LOC_Os07g48410.1 RNA-binding zinc finger protein, putative, expressed zf-CCCH
LOC_Os07g48410.2 RNA-binding zinc finger protein, putative, expressed zf-CCCH
LOC_Os08g03310.1 zinc finger family protein, putative, expressed zf-CCCH
LOC_Os08g03310.2 zinc finger family protein, putative, expressed zf-CCCH
LOC_Os08g03310.3 zinc finger family protein, putative, expressed zf-CCCH
LOC_Os08g03310.4 zinc finger family protein, putative, expressed zf-CCCH
LOC_Os08g03310.5 zinc finger family protein, putative, expressed zf-CCCH
LOC_Os08g03310.6 zinc finger family protein, putative, expressed zf-CCCH
LOC_Os08g04170.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os08g06330.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os08g38370.1 zinc finger C-x8-C-x5-C-x3-H type family protein zf-CCCH
LOC_Os09g13530.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os09g19940.1 cwfJ-like family protein, putative, expressed CwfJ_C_1 CwfJ_C_2 zf-CCCH
LOC_Os09g19940.2 cwfJ-like family protein, putative, expressed CwfJ_C_1 CwfJ_C_2 zf-CCCH
LOC_Os09g31482.1 splicing factor U2AF, putative, expressed zf-CCCH
LOC_Os09g31482.3 splicing factor U2AF, putative, expressed zf-CCCH
LOC_Os09g36090.1 plus-3 domain containing protein, expressed GYF Plus-3 SWIB zf-CCCH
LOC_Os10g25220.1 SAP domain containing protein, expressed SAP zf-CCCH
LOC_Os11g28270.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os11g28270.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os11g28270.3 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os12g03554.1 zinc finger C-x8-C-x5-C-x3-H type family protein zf-CCCH
LOC_Os12g18120.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os12g18120.2 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os12g18120.4 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os12g21700.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed zf-CCCH
LOC_Os12g33090.1 zinc finger family protein, putative, expressed Ank zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112

Specific references

Wang, D; Guo, Y; Wu, C; Yang, G; Li, Y; Zheng, C. 2008. Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics 9:44 PUBMEDID:18221561