Plant Transcription factor database - Universität Potsdam
version: 3.0

Ostreococcus tauri C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 19 gene models in this family



Gene modelDescriptionDomains
10777 fgenesh1_pg.C_Chr_04.0001000288 zf-CCCH
10914 fgenesh1_pg.C_Chr_05.0001000049 zf-CCCH
13091 fgenesh1_pg.C_Chr_12.0001000110 zf-CCCH
13137 fgenesh1_pg.C_Chr_12.0001000156 zf-CCCH
14086 fgenesh1_pg.C_Chr_16.0001000191 zf-CCCH
17276 e_gw1.05.00.259.1 zf-CCCH
23564 estExt_fgenesh1_pg.C_Chr_04.00010028 Ank zf-CCCH
23861 estExt_fgenesh1_pg.C_Chr_06.00010275 zf-CCCH
31199 0200010530 zf-CCCH
31470 0300010024 zf-CCCH
31719 0300010273 zf-CCCH
31899 0300010453 zf-C3HC4 zf-CCCH
32611 0400010557 zf-CCCH
32641 0500010006 Methyltransf_4 PPR zf-CCCH
32767 0500010132 zf-CCCH
34297 0800010184 zf-CCCH
35925 1200010223 zf-CCCH
37133 1600010121 RRM_1 zf-CCCH
37617 1800010021 KH_1 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112