Plant Transcription factor database - Universität Potsdam
version: 3.0

Physcomitrella patens C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 45 gene models in this family



Gene modelDescriptionDomains
102008 fgenesh1_pg.scaffold_520000001 RRM_1 zf-CCCH
127743 e_gw1.66.209.1 KH_1 zf-CCCH
131143 e_gw1.86.32.1 zf-CCCH
137259 e_gw1.136.54.1 RRM_1 zf-CCCH
138354 e_gw1.145.11.1 zf-CCCH
139138 e_gw1.154.31.1 zf-C3HC4 zf-CCCH
141405 e_gw1.177.112.1 zf-CCCH
146266 e_gw1.241.84.1 zf-CCCH
14712 gw1.102.25.1 zf-CCCH
14781 gw1.135.30.1 zf-CCCH
149412 e_gw1.297.59.1 zf-CCCH
149443 e_gw1.297.58.1 zf-CCCH
151209 e_gw1.333.45.1 zf-CCCH
154278 e_gw1.415.17.1 zf-CCCH
159145 estExt_fgenesh1_pg.C_90259 YTH zf-CCCH
159541 estExt_fgenesh1_pg.C_130201 Surp zf-CCCH
159636 estExt_fgenesh1_pg.C_140125 zf-CCCH
160016 estExt_fgenesh1_pg.C_170188 zf-CCCH zf-U1
161158 estExt_fgenesh1_pg.C_300102 zf-CCCH
162478 estExt_fgenesh1_pg.C_430142 zf-CCCH
162484 estExt_fgenesh1_pg.C_430161 RRM_1 zf-CCCH
168958 estExt_fgenesh1_pg.C_1950001 zf-CCCH
170356 estExt_fgenesh1_pg.C_2420003 zf-CCCH
172534 estExt_fgenesh1_pg.C_3580026 zf-CCCH
172783 estExt_fgenesh1_pg.C_3800009 zf-CCCH
176001 estExt_gwp_gw1.C_150054 CwfJ_C_1 CwfJ_C_2 zf-CCCH
177953 estExt_gwp_gw1.C_270141 G-patch zf-CCCH
182782 estExt_gwp_gw1.C_590273 KH_1 zf-CCCH
185655 estExt_gwp_gw1.C_840209 RRM_1 zf-CCCH
187995 estExt_gwp_gw1.C_1140075 zf-C3HC4 zf-CCCH
194373 estExt_gwp_gw1.C_2150084 zf-CCCH
204377 estExt_Genewise1.C_200083 RRM_1 zf-CCCH
229274 fgenesh2_pg.scaffold_72000119 zf-CCCH
24014 gw1.14.124.1 zf-CCCH
25638 gw1.15.161.1 zf-CCCH
29541 gw1.6.197.1 zf-CCCH
29547 gw1.6.198.1 zf-CCCH
3694 gw1.374.9.1 WD40 zf-CCCH
3703 gw1.204.23.1 WD40 zf-CCCH
4327 gw1.233.15.1 zf-CCCH
65813 fgenesh1_pg.scaffold_8000015 Filamin RRM_1 zf-CCCH
78748 fgenesh1_pg.scaffold_74000022 RRM_1 zf-CCCH
88147 fgenesh1_pg.scaffold_165000072 RRM_1 zf-CCCH
94249 fgenesh1_pg.scaffold_257000036 zf-CCCH
96790 fgenesh1_pg.scaffold_311000037 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112