Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 99 gene models in this family



Gene modelDescriptionDomains
172156 gw1.I.756.1 zf-CCCH
173205 gw1.I.1805.1 Ank zf-CCCH
195667 gw1.IV.756.1 GYF zf-CCCH
195942 gw1.IV.1031.1 zf-CCCH
202799 gw1.IX.3264.1 zf-C3HC4 zf-CCCH
203457 gw1.IX.3922.1 RRM_1 zf-CCCH
204649 gw1.V.50.1 zf-CCCH
206268 gw1.V.1669.1 zf-CCCH
219537 gw1.VII.3842.1 AT_hook GYF Plus-3 SWIB zf-CCCH
225328 gw1.X.25.1 zf-CCCH
229700 gw1.X.4397.1 zf-CCCH
234849 gw1.XI.2829.1 YTH zf-CCCH
249034 gw1.XIX.1434.1 zf-CCCH
253741 gw1.XV.3177.1 WD40 zf-CCCH
256705 gw1.XVI.2644.1 zf-CCCH
258695 gw1.XVII.686.1 RRM_1 zf-CCCH
268389 gw1.132.19.1 zf-CCCH
271177 gw1.14518.1.1 zf-CCCH
275060 gw1.16923.1.1 zf-CCCH
275078 gw1.16981.1.1 zf-CCCH
284656 gw1.3296.2.1 zf-CCCH
416242 gw1.VI.615.1 KH_1 zf-CCCH
419958 gw1.VIII.1386.1 Ank zf-CCCH
422794 gw1.XII.1254.1 zf-CCCH
422910 gw1.XII.1370.1 WD40 zf-CCCH
423970 gw1.29.482.1 zf-CCCH
424416 gw1.87.30.1 zf-CCCH
552730 eugene3.00002045 zf-CCCH
554027 eugene3.00030660 zf-CCCH
557115 eugene3.00090375 zf-CCCH
557852 eugene3.00091112 Ank zf-CCCH
557974 eugene3.00091234 RRM_1 zf-CCCH
560016 eugene3.00051631 zf-CCCH
560536 eugene3.00060495 Ank zf-CCCH
561056 eugene3.00061015 zf-CCCH
561711 eugene3.00061670 zf-CCCH
562306 eugene3.00070244 zf-CCCH
562448 eugene3.00070386 zf-CCCH
576266 eugene3.00160401 KH_1 zf-CCCH
576336 eugene3.00160471 Ank zf-CCCH
578310 eugene3.00180534 G-patch zf-CCCH
579857 eugene3.11620003 zf-CCCH
581756 eugene3.01320010 zf-CCCH
589197 eugene3.02850004 CwfJ_C_1 CwfJ_C_2 zf-CCCH
593044 eugene3.04620003 zf-CCCH
593864 eugene3.00570108 zf-CCCH
596778 eugene3.00860069 zf-CCCH
642753 grail3.0003001802 zf-CCCH
647251 grail3.0074003801 RRM_1 zf-CCCH
649303 grail3.0001035501 zf-CCCH
649328 grail3.0001037501 GYF zf-CCCH
652935 grail3.0023014401 zf-CCCH
655269 grail3.0019016101 zf-CCCH
656369 grail3.0010011801 zf-CCCH
657068 grail3.0009000601 zf-CCCH
658643 grail3.0006011701 zf-CCCH
659387 grail3.0022002301 zf-CCCH
662559 grail3.0016004301 zf-CCCH zf-U1
675178 grail3.0220000401 zf-CCCH
676151 grail3.0028027401 RRM_1 zf-CCCH
678874 grail3.5039000101 zf-CCCH
681070 grail3.0086005901 zf-CCCH
706432 estExt_Genewise1_v1.C_LG_I1843 zf-C3HC4 zf-CCCH
714552 estExt_Genewise1_v1.C_LG_IV4525 zf-CCCH
716932 estExt_Genewise1_v1.C_LG_VI0524 Ank zf-CCCH
722786 estExt_Genewise1_v1.C_LG_IX3294 Ank zf-CCCH
722961 estExt_Genewise1_v1.C_LG_IX3612 zf-CCCH
723083 estExt_Genewise1_v1.C_LG_IX3799 RRM_1 zf-CCCH
728939 estExt_Genewise1_v1.C_LG_XII1294 Ank zf-CCCH
731318 estExt_Genewise1_v1.C_LG_XIV1660 zf-C3HC4 zf-CCCH
732336 estExt_Genewise1_v1.C_LG_XIV3517 zf-CCCH
732453 estExt_Genewise1_v1.C_LG_XIV3724 zf-CCCH
733505 estExt_Genewise1_v1.C_LG_XV1903 zf-CCCH
736814 estExt_Genewise1_v1.C_LG_XVIII0752 zf-CCCH
741667 estExt_Genewise1_v1.C_660125 zf-CCCH
751997 fgenesh4_pg.C_LG_I001600 RRM_1 zf-CCCH
752023 fgenesh4_pg.C_LG_I001626 Ank zf-CCCH
752246 fgenesh4_pg.C_LG_I001849 Ank zf-CCCH
752407 fgenesh4_pg.C_LG_I002010 zf-CCCH
752498 fgenesh4_pg.C_LG_I002101 RRM_1 zf-CCCH
753193 fgenesh4_pg.C_LG_I002796 YTH zf-CCCH
754055 fgenesh4_pg.C_LG_II000235 zf-CCCH
754535 fgenesh4_pg.C_LG_II000715 zf-CCCH
754593 fgenesh4_pg.C_LG_II000773 zf-CCCH
756771 fgenesh4_pg.C_LG_III000313 zf-CCCH
756947 fgenesh4_pg.C_LG_III000489 SAP zf-CCCH
759364 fgenesh4_pg.C_LG_IV000992 Ank RRM_1 zf-CCCH
759960 fgenesh4_pg.C_LG_V000012 zf-CCCH
763739 fgenesh4_pg.C_LG_VII000084 zf-CCCH
764844 fgenesh4_pg.C_LG_VII001189 zf-CCCH
768064 fgenesh4_pg.C_LG_IX001115 Ank zf-CCCH
784299 fgenesh4_pg.C_scaffold_124000067 zf-CCCH
817699 estExt_fgenesh4_pg.C_LG_III1884 KH_1 zf-CCCH
820289 estExt_fgenesh4_pg.C_LG_VIII0364 zf-CCCH
826388 estExt_fgenesh4_pg.C_280105 zf-CCCH
827173 estExt_fgenesh4_pg.C_640230 zf-CCCH
829302 estExt_fgenesh4_pm.C_LG_I0043 KH_1 zf-CCCH
833322 estExt_fgenesh4_pm.C_LG_IX0691 zf-CCCH
833761 estExt_fgenesh4_pm.C_LG_X0729 Ank zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112