Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 57 gene models in this family



Gene modelDescriptionDomains
143132 estExt_fgenesh1_pm.C_chr_30419 Helicase_C zf-CCCH
149258 estExt_fgenesh1_kg.C_chr_70040 zf-CCCH
150020 estExt_fgenesh1_kg.C_chr_100184 KH_1 zf-CCCH
4753849 estExt_Genewise1.C_chr_39698 zf-CCCH
4754425 estExt_Genewise1.C_chr_310629 zf-CCCH
4758267 estExt_Genewise1.C_chr_49139 G-patch zf-CCCH
4760333 estExt_Genewise1.C_chr_60261 Dus zf-CCCH
4767412 estExt_Genewise1.C_chr_91497 zf-CCCH
4770553 estExt_Genewise1.C_chr_102964 zf-C3HC4 zf-CCCH
4797888 e_gw1.3.3106.1 zf-CCCH
4868336 estExt_Genewise1Plus.C_chr_12265 Ank zf-CCCH
4876092 estExt_Genewise1Plus.C_chr_29868 Ank zf-CCCH
4879172 estExt_Genewise1Plus.C_chr_37370 zf-CCCH
4882757 estExt_Genewise1Plus.C_chr_42202 zf-C3HC4 zf-CCCH
4884146 estExt_Genewise1Plus.C_chr_47823 zf-C3HC4 zf-CCCH
4889482 estExt_Genewise1Plus.C_chr_68363 KH_1 zf-CCCH
4963681 fgenesh1_pg.C_chr_1000283 RRM_1 zf-CCCH
4964593 fgenesh1_pg.C_chr_1001195 zf-CCCH
4964628 fgenesh1_pg.C_chr_1001230 zf-CCCH
4985657 fgenesh1_pg.C_chr_6002544 zf-CCCH
4985725 fgenesh1_pg.C_chr_6002612 zf-CCCH
4990855 fgenesh1_pg.C_chr_9000583 zf-CCCH
5000148 estExt_fgenesh1_pg.C_chr_22528 zf-CCCH
5001311 estExt_fgenesh1_pg.C_chr_30324 zf-CCCH
5001700 estExt_fgenesh1_pg.C_chr_31073 zf-CCCH
5002041 estExt_fgenesh1_pg.C_chr_31919 zf-CCCH
5002328 estExt_fgenesh1_pg.C_chr_32463 zf-CCCH
5004618 estExt_fgenesh1_pg.C_chr_42560 RRM_1 zf-CCCH
5006273 estExt_fgenesh1_pg.C_chr_60987 zf-CCCH
5007510 estExt_fgenesh1_pg.C_chr_70468 zf-CCCH
5008647 estExt_fgenesh1_pg.C_chr_80960 zf-CCCH
5010133 estExt_fgenesh1_pg.C_chr_92263 zf-CCCH
5010550 estExt_fgenesh1_pg.C_chr_100509 RRM_1 zf-CCCH
5030060 Sb01g037830 zf-CCCH
5030352 Sb01g044515 zf-CCCH
5032111 Sb10g027200 YTH zf-CCCH
5032128 Sb10g027530 zf-CCCH
5034872 Sb02g043180 zf-CCCH
5035155 Sb03g004260 zf-CCCH
5035501 Sb03g009590 zf-CCCH zf-U1
5038385 Sb04g021976 zf-CCCH
5038438 Sb04g022810 zf-CCCH
5038439 Sb04g022813 zf-CCCH
5039284 Sb04g038370 zf-CCCH
5040224 Sb05g013190 zf-CCCH
5044414 Sb08g001980 zf-CCCH
5045131 Sb08g016640 Ank zf-CCCH
5051093 Sb02g023040 CwfJ_C_1 CwfJ_C_2 zf-CCCH
5054839 Sb04g006450 KH_1 zf-CCCH
5055810 Sb04g031930 WD40 zf-CCCH
5056283 Sb05g001540 zf-CCCH
5056910 Sb06g000450 zf-CCCH
5057103 Sb06g014350 RRM_1 zf-CCCH
5061012 Sb09g029330 zf-CCCH
5061966 Sb10g024960 zf-CCCH
5062220 Sb10g029250 zf-CCCH
5062368 Sb01g036490 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112