Plant Transcription factor database - Universität Potsdam
version: 3.0

Selaginella moellendorffii C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 46 gene models in this family



Gene modelDescriptionDomains
101529 e_gw1.24.735.1 zf-CCCH
110501 e_gw1.40.506.1 zf-C3HC4 zf-CCCH
112852 e_gw1.45.79.1 zf-CCCH
123490 e_gw1.71.106.1 zf-CCCH
154896 estExt_Genewise1.C_510373 RRM_1 zf-CCCH
16791 gw1.11.272.1 zf-CCCH
171130 estExt_Genewise1Plus.C_130688 G-patch zf-CCCH
173103 estExt_Genewise1Plus.C_200534 HA2 Helicase_C zf-CCCH
19741 gw1.40.186.1 zf-CCCH
230014 fgenesh1_pm.C_scaffold_1000024 zf-CCCH
405518 fgenesh2_pg.C_scaffold_4000092 zf-CCCH
406998 fgenesh2_pg.C_scaffold_6000249 zf-C3HC4 zf-CCCH
408664 fgenesh2_pg.C_scaffold_9000037 PB1 zf-CCCH zf-NF-X1
409324 fgenesh2_pg.C_scaffold_10000222 zf-CCCH
413367 fgenesh2_pg.C_scaffold_20000228 zf-CCCH
413447 fgenesh2_pg.C_scaffold_20000308 CwfJ_C_1 CwfJ_C_2 zf-CCCH
416330 fgenesh2_pg.C_scaffold_30000091 zf-CCCH
416803 fgenesh2_pg.C_scaffold_32000041 zf-CCCH
421270 fgenesh2_pg.C_scaffold_51000002 zf-CCCH
423539 fgenesh2_pg.C_scaffold_62000046 zf-CCCH
428163 fgenesh2_pg.C_scaffold_99000013 RRM_1 zf-CCCH
437396 estExt_fgenesh2_pg.C_00420 zf-CCCH
437689 estExt_fgenesh2_pg.C_01032 RRM_1 zf-CCCH
437914 estExt_fgenesh2_pg.C_10436 zf-CCCH
438270 estExt_fgenesh2_pg.C_20476 PB1 zf-CCCH zf-NF-X1
439924 estExt_fgenesh2_pg.C_80472 RRM_1 zf-CCCH
440790 estExt_fgenesh2_pg.C_120230 zf-CCCH
441325 estExt_fgenesh2_pg.C_150246 zf-CCCH
441947 estExt_fgenesh2_pg.C_200170 zf-CCCH
441970 estExt_fgenesh2_pg.C_200243 Helicase_C zf-CCCH
443970 estExt_fgenesh2_pg.C_380108 zf-CCCH
445909 estExt_fgenesh2_pg.C_620109 CwfJ_C_1 CwfJ_C_2 zf-CCCH
448225 estExt_fgenesh2_pg.C_1130028 F-box GATase_2 zf-CCCH
448779 estExt_fgenesh2_pg.C_1360023 zf-CCCH
45393 gw1.68.205.1 zf-CCCH
45667 gw1.151.82.1 zf-CCCH
62212 gw1.1.1274.1 Ank zf-CCCH
65612 gw1.10.916.1 zf-CCCH
70673 gw1.0.2236.1 zf-CCCH
75886 e_gw1.0.2643.1 KH_1 zf-CCCH
77053 e_gw1.1.105.1 zf-CCCH
80672 e_gw1.3.744.1 zf-CCCH
89139 e_gw1.10.7.1 Dus zf-CCCH
89394 e_gw1.10.874.1 WD40 zf-CCCH
98008 e_gw1.20.533.1 HA2 Helicase_C zf-CCCH
98217 e_gw1.20.84.1 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112