Plant Transcription factor database - Universität Potsdam
version: 3.0

Vitis vinifera C3H Family

Description

Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Members of this family
  SHOULD possess zf-CCCH domain
  SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 60 gene models in this family



Gene modelDescriptionDomains
GSVIVP00002135001 zf-CCCH
GSVIVP00002951001 zf-CCCH
GSVIVP00003098001 WD40 zf-CCCH
GSVIVP00003102001 WD40 zf-CCCH
GSVIVP00003737001 KH_1 zf-CCCH
GSVIVP00003884001 zf-CCCH
GSVIVP00007422001 WD40 zf-CCCH
GSVIVP00013976001 zf-CCCH
GSVIVP00014226001 zf-CCCH
GSVIVP00014464001 zf-CCCH
GSVIVP00015456001 zf-CCCH
GSVIVP00015742001 zf-CCCH
GSVIVP00015900001 zf-CCCH
GSVIVP00016540001 zf-CCCH
GSVIVP00016555001 CwfJ_C_1 CwfJ_C_2 zf-CCCH
GSVIVP00016783001 KH_1 zf-CCCH
GSVIVP00016857001 zf-CCCH
GSVIVP00016862001 zf-CCCH
GSVIVP00018279001 zf-CCCH
GSVIVP00018620001 zf-CCCH
GSVIVP00019362001 zf-CCCH
GSVIVP00019796001 zf-CCCH
GSVIVP00020595001 zf-CCCH
GSVIVP00020684001 zf-CCCH
GSVIVP00020940001 Ank RRM_1 zf-CCCH
GSVIVP00021274001 zf-CCCH
GSVIVP00021681001 RRM_1 zf-CCCH
GSVIVP00022218001 zf-CCCH
GSVIVP00022545001 zf-CCCH zf-U1
GSVIVP00023519001 Filamin RRM_1 zf-CCCH
GSVIVP00023577001 zf-CCCH
GSVIVP00024088001 Ank zf-CCCH
GSVIVP00024123001 RRM_1 zf-CCCH
GSVIVP00024168001 RRM_1 zf-CCCH
GSVIVP00024526001 zf-CCCH
GSVIVP00024607001 Ank zf-CCCH
GSVIVP00024711001 KH_1 zf-CCCH
GSVIVP00025101001 zf-CCCH
GSVIVP00025117001 WD40 zf-CCCH
GSVIVP00025374001 KH_1 zf-CCCH
GSVIVP00025478001 PUF zf-CCCH
GSVIVP00025561001 Ank zf-CCCH
GSVIVP00025958001 zf-CCCH
GSVIVP00026060001 zf-CCCH
GSVIVP00027197001 RRM_1 zf-CCCH
GSVIVP00027989001 Helicase_C zf-CCCH
GSVIVP00028411001 YTH zf-CCCH
GSVIVP00028802001 Ank zf-CCCH
GSVIVP00029141001 zf-CCCH
GSVIVP00030418001 zf-CCCH
GSVIVP00032141001 zf-CCCH
GSVIVP00032809001 G-patch zf-CCCH
GSVIVP00033786001 zf-CCCH
GSVIVP00034038001 SAP zf-CCCH
GSVIVP00034571001 DUF247 zf-CCCH
GSVIVP00035343001 zf-CCCH
GSVIVP00035978001 Dus zf-CCCH
GSVIVP00036805001 zf-CCCH
GSVIVP00036835001 GYF zf-CCCH
GSVIVP00038281001 zf-CCCH

General references

Li, Z; Thomas, TL. 1998. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10(3):383-98 PUBMEDID:9501112