Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata CCAAT Family

Description

Bernadt et al. 2005: NF-Y is a bifunctional transcription factor capable of activating or repressing transcription. NF-Y specifically recognizes CCAAT box motifs present in many eukaryotic promoters. The mechanisms involved in regulating its activity are poorly understood.

Members of this family
  SHOULD possess CBFB_NFYA CBFD_NFYB_HMF CCAAT-Dr1 NF-YB NF-YC domains

Domain alignments

This family is also present in:

References

There are 52 gene models in this family



Gene modelDescriptionDomains
325322 fgenesh1_pm.C_scaffold_6000542 NF-YC CBFD_NFYB_HMF
334085 fgenesh1_pg.C_scaffold_1000650 NF-YC CBFD_NFYB_HMF
337754 fgenesh1_pg.C_scaffold_1004319 NF-YC CBFD_NFYB_HMF Histone
339498 fgenesh1_pg.C_scaffold_2001597 CBFB_NFYA
356189 fgenesh1_pg.C_scaffold_7003362 NF-YC CBFD_NFYB_HMF Histone
359494 fgenesh1_pg.C_scaffold_286000001 CBFB_NFYA
470975 fgenesh2_kg.1__929__AT1G08970.2 NF-YC CBFD_NFYB_HMF Histone
471968 fgenesh2_kg.1__1922__AT1G17590.3 CBFB_NFYA
472432 fgenesh2_kg.1__2386__AT1G21970.1 NF-YB CBFD_NFYB_HMF
473278 fgenesh2_kg.1__3232__AT1G30500.2 CBFB_NFYA
474223 fgenesh2_kg.1__4177__AT1G51060.1 NF-YC CBFD_NFYB_HMF Histone
474686 fgenesh2_kg.1__4640__AT1G56170.2 NF-YC CBFD_NFYB_HMF Histone
474760 fgenesh2_kg.1__4714__AT1G54830.1 NF-YC CBFD_NFYB_HMF Histone
477862 fgenesh2_kg.3__563__AT3G05690.1 CBFB_NFYA
478603 fgenesh2_kg.3__1304__AT3G12480.1 NF-YC CBFD_NFYB_HMF
481647 fgenesh2_kg.4__707__AT2G27470.1 NF-YB NF-YC CBFD_NFYB_HMF
482436 fgenesh2_kg.4__1496__AT2G34720.1 CBFB_NFYA
483964 fgenesh2_kg.4__3024__AT2G47810.1 NF-YB CBFD_NFYB_HMF
485217 fgenesh2_kg.5__1209__AT3G48590.1 NF-YC CBFD_NFYB_HMF Histone
487654 fgenesh2_kg.6__788__AT5G08190.1 CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
489163 fgenesh2_kg.6__2297__AT5G23090.2 CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
492075 fgenesh2_kg.7__1508__AT4G27230.1 NF-YC CBFD_NFYB_HMF Histone
493452 fgenesh2_kg.7__2885__AT4G14540.1 NF-YB CBFD_NFYB_HMF
494163 fgenesh2_kg.7__3596__AT5G38140.1 NF-YC CBFD_NFYB_HMF
494206 fgenesh2_kg.8__22__AT5G47670.2 NF-YB CBFD_NFYB_HMF
495114 fgenesh2_kg.8__930__AT5G50480.1 NF-YC CBFD_NFYB_HMF Histone
496533 fgenesh2_kg.8__2349__AT5G63470.1 NF-YC CBFD_NFYB_HMF Histone
497363 fgenesh2_kg.264__1__AT1G21970.1 NF-YB CBFD_NFYB_HMF
856033 Al_scaffold_0481_2 CBFB_NFYA
861669 Al_scaffold_0006_1178 CBFB_NFYA
862367 Al_scaffold_0006_1876 NF-YC
872815 Al_scaffold_0003_1456 CBFB_NFYA
883093 Al_scaffold_0001_4860 CBFB_NFYA
888122 scaffold_100916.1 NF-YC CBFD_NFYB_HMF Histone
888138 scaffold_100932.1 NF-YB CBFD_NFYB_HMF
889673 scaffold_102467.1 NF-YB CBFD_NFYB_HMF
889675 scaffold_102469.1 NF-YB CBFD_NFYB_HMF
898500 scaffold_302470.1 NF-YC CBFD_NFYB_HMF Histone
898527 scaffold_302497.1 CBFB_NFYA
899587 scaffold_303557.1 NF-YB CBFD_NFYB_HMF
899680 scaffold_303650.1 NF-YC CBFD_NFYB_HMF Histone
902841 scaffold_402342.1 NF-YB CBFD_NFYB_HMF
903128 scaffold_402629.1 NF-YB CBFD_NFYB_HMF
906721 scaffold_502425.1 NF-YB CBFD_NFYB_HMF
908579 scaffold_600636.1 CBFB_NFYA
916372 scaffold_704114.1 NF-YC CBFD_NFYB_HMF Histone
916623 scaffold_800023.1 NF-YB CBFD_NFYB_HMF
917343 scaffold_800743.1 NF-YC CBFD_NFYB_HMF Histone
918081 scaffold_801481.1 NF-YC CBFD_NFYB_HMF Histone
918084 scaffold_801484.1 NF-YC CBFD_NFYB_HMF Histone
918088 scaffold_801488.1 NF-YC CBFD_NFYB_HMF Histone
918601 scaffold_802001.1 NF-YC CBFD_NFYB_HMF Histone

General references

Bernadt, CT; Nowling, T; Wiebe, MS; Rizzino, A. 2005. NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner. Gene Expr. 12(3):193-212 PUBMEDID:16128003
Li, XY; Mantovani, R; Hooft van Huijsduijnen, R; Andre, I; Benoist, C; Mathis, D. 1992. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res. 20(5):1087-91 PUBMEDID:1549471