Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata CCAAT Family


Bernadt et al. 2005: NF-Y is a bifunctional transcription factor capable of activating or repressing transcription. NF-Y specifically recognizes CCAAT box motifs present in many eukaryotic promoters. The mechanisms involved in regulating its activity are poorly understood.

Members of this family

Domain alignments

This family is also present in:


There are 52 gene models in this family

Gene modelDescriptionDomains
325322 fgenesh1_pm.C_scaffold_6000542 NF-YC CBFD_NFYB_HMF
334085 fgenesh1_pg.C_scaffold_1000650 NF-YC CBFD_NFYB_HMF
337754 fgenesh1_pg.C_scaffold_1004319 NF-YC CBFD_NFYB_HMF Histone
339498 fgenesh1_pg.C_scaffold_2001597 CBFB_NFYA
356189 fgenesh1_pg.C_scaffold_7003362 NF-YC CBFD_NFYB_HMF Histone
359494 fgenesh1_pg.C_scaffold_286000001 CBFB_NFYA
470975 fgenesh2_kg.1__929__AT1G08970.2 NF-YC CBFD_NFYB_HMF Histone
471968 fgenesh2_kg.1__1922__AT1G17590.3 CBFB_NFYA
472432 fgenesh2_kg.1__2386__AT1G21970.1 NF-YB CBFD_NFYB_HMF
473278 fgenesh2_kg.1__3232__AT1G30500.2 CBFB_NFYA
474223 fgenesh2_kg.1__4177__AT1G51060.1 NF-YC CBFD_NFYB_HMF Histone
474686 fgenesh2_kg.1__4640__AT1G56170.2 NF-YC CBFD_NFYB_HMF Histone
474760 fgenesh2_kg.1__4714__AT1G54830.1 NF-YC CBFD_NFYB_HMF Histone
477862 fgenesh2_kg.3__563__AT3G05690.1 CBFB_NFYA
478603 fgenesh2_kg.3__1304__AT3G12480.1 NF-YC CBFD_NFYB_HMF
481647 fgenesh2_kg.4__707__AT2G27470.1 NF-YB NF-YC CBFD_NFYB_HMF
482436 fgenesh2_kg.4__1496__AT2G34720.1 CBFB_NFYA
483964 fgenesh2_kg.4__3024__AT2G47810.1 NF-YB CBFD_NFYB_HMF
485217 fgenesh2_kg.5__1209__AT3G48590.1 NF-YC CBFD_NFYB_HMF Histone
487654 fgenesh2_kg.6__788__AT5G08190.1 CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
489163 fgenesh2_kg.6__2297__AT5G23090.2 CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
492075 fgenesh2_kg.7__1508__AT4G27230.1 NF-YC CBFD_NFYB_HMF Histone
493452 fgenesh2_kg.7__2885__AT4G14540.1 NF-YB CBFD_NFYB_HMF
494163 fgenesh2_kg.7__3596__AT5G38140.1 NF-YC CBFD_NFYB_HMF
494206 fgenesh2_kg.8__22__AT5G47670.2 NF-YB CBFD_NFYB_HMF
495114 fgenesh2_kg.8__930__AT5G50480.1 NF-YC CBFD_NFYB_HMF Histone
496533 fgenesh2_kg.8__2349__AT5G63470.1 NF-YC CBFD_NFYB_HMF Histone
497363 fgenesh2_kg.264__1__AT1G21970.1 NF-YB CBFD_NFYB_HMF
856033 Al_scaffold_0481_2 CBFB_NFYA
861669 Al_scaffold_0006_1178 CBFB_NFYA
862367 Al_scaffold_0006_1876 NF-YC
872815 Al_scaffold_0003_1456 CBFB_NFYA
883093 Al_scaffold_0001_4860 CBFB_NFYA
888122 scaffold_100916.1 NF-YC CBFD_NFYB_HMF Histone
888138 scaffold_100932.1 NF-YB CBFD_NFYB_HMF
889673 scaffold_102467.1 NF-YB CBFD_NFYB_HMF
889675 scaffold_102469.1 NF-YB CBFD_NFYB_HMF
898500 scaffold_302470.1 NF-YC CBFD_NFYB_HMF Histone
898527 scaffold_302497.1 CBFB_NFYA
899587 scaffold_303557.1 NF-YB CBFD_NFYB_HMF
899680 scaffold_303650.1 NF-YC CBFD_NFYB_HMF Histone
902841 scaffold_402342.1 NF-YB CBFD_NFYB_HMF
903128 scaffold_402629.1 NF-YB CBFD_NFYB_HMF
906721 scaffold_502425.1 NF-YB CBFD_NFYB_HMF
908579 scaffold_600636.1 CBFB_NFYA
916372 scaffold_704114.1 NF-YC CBFD_NFYB_HMF Histone
916623 scaffold_800023.1 NF-YB CBFD_NFYB_HMF
917343 scaffold_800743.1 NF-YC CBFD_NFYB_HMF Histone
918081 scaffold_801481.1 NF-YC CBFD_NFYB_HMF Histone
918084 scaffold_801484.1 NF-YC CBFD_NFYB_HMF Histone
918088 scaffold_801488.1 NF-YC CBFD_NFYB_HMF Histone
918601 scaffold_802001.1 NF-YC CBFD_NFYB_HMF Histone

General references

Bernadt, CT; Nowling, T; Wiebe, MS; Rizzino, A. 2005. NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner. Gene Expr. 12(3):193-212 PUBMEDID:16128003
Li, XY; Mantovani, R; Hooft van Huijsduijnen, R; Andre, I; Benoist, C; Mathis, D. 1992. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res. 20(5):1087-91 PUBMEDID:1549471