Plant Transcription factor database - Universität Potsdam
version: 3.0

Chlorella sp. NC64A CCAAT Family

Description

Bernadt et al. 2005: NF-Y is a bifunctional transcription factor capable of activating or repressing transcription. NF-Y specifically recognizes CCAAT box motifs present in many eukaryotic promoters. The mechanisms involved in regulating its activity are poorly understood.

Members of this family
  SHOULD possess CBFB_NFYA CBFD_NFYB_HMF CCAAT-Dr1 NF-YB NF-YC domains

Domain alignments

This family is also present in:

References

There are 14 gene models in this family



Gene modelDescriptionDomains
134630 IGS.gm_12_00016 NF-YC CBFD_NFYB_HMF
135742 IGS.gm_14_00275 NF-YC CBFD_NFYB_HMF Histone
14485 gw1.4.415.1 NF-YB CBFD_NFYB_HMF
14739 gw1.11.292.1 NF-YB
17734 gw1.12.608.1 NF-YB CBFD_NFYB_HMF
21904 e_gw1.7.263.1 NF-YC CBFD_NFYB_HMF Histone
27894 e_gw1.28.78.1 NF-YC CBFD_NFYB_HMF Histone
28450 e_gw1.35.108.1 NF-YC CBFD_NFYB_HMF Histone
48410 fgenesh3_pm.C_scaffold_1000033 CBFD_NFYB_HMF Histone
52003 fgenesh3_pg.C_scaffold_9000028 NF-YC CBFD_NFYB_HMF
53340 fgenesh3_pg.C_scaffold_15000025 Ank CBFB_NFYA PAN_1
54972 fgenesh3_pg.C_scaffold_28000002 NF-YC CBFD_NFYB_HMF Histone
54989 fgenesh3_pg.C_scaffold_28000019 NF-YC CBFD_NFYB_HMF Histone
56806 estExt_fgenesh3_pg.C_20344 NF-YC CBFD_NFYB_HMF HMG_box

General references

Bernadt, CT; Nowling, T; Wiebe, MS; Rizzino, A. 2005. NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner. Gene Expr. 12(3):193-212 PUBMEDID:16128003
Li, XY; Mantovani, R; Hooft van Huijsduijnen, R; Andre, I; Benoist, C; Mathis, D. 1992. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res. 20(5):1087-91 PUBMEDID:1549471