Plant Transcription factor database - Universität Potsdam
version: 3.0

Carica papaya CCAAT Family

Description

Bernadt et al. 2005: NF-Y is a bifunctional transcription factor capable of activating or repressing transcription. NF-Y specifically recognizes CCAAT box motifs present in many eukaryotic promoters. The mechanisms involved in regulating its activity are poorly understood.

Members of this family
  SHOULD possess CBFB_NFYA CBFD_NFYB_HMF CCAAT-Dr1 NF-YB NF-YC domains

Domain alignments

This family is also present in:

References

There are 23 gene models in this family



Gene modelDescriptionDomains
evm.TU.supercontig_1.257 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_104.8 CBFB_NFYA Self-incomp_S1
evm.TU.supercontig_114.50 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_12.141 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_12.154 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_125.6 CBFB_NFYA
evm.TU.supercontig_13.66 CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_13.98 NF-YC CBFD_NFYB_HMF
evm.TU.supercontig_136.30 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_190.22 CBFD_NFYB_HMF Histone
evm.TU.supercontig_196.1 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_2.394 NF-YB NF-YC CBFD_NFYB_HMF Histone
evm.TU.supercontig_20.48 CBFB_NFYA
evm.TU.supercontig_25.97 CBFB_NFYA
evm.TU.supercontig_287.4 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_34.32 NF-YC CBFD_NFYB_HMF Histone
evm.TU.supercontig_43.41 NF-YC CBFD_NFYB_HMF
evm.TU.supercontig_48.70 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_84.116 NF-YC CBFD_NFYB_HMF Histone
evm.TU.supercontig_84.48 CBFB_NFYA
evm.TU.supercontig_9.140 NF-YC Histone
evm.TU.supercontig_9.187 NF-YB CBFD_NFYB_HMF
evm.TU.supercontig_97.83 NF-YC CBFD_NFYB_HMF Histone

General references

Bernadt, CT; Nowling, T; Wiebe, MS; Rizzino, A. 2005. NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner. Gene Expr. 12(3):193-212 PUBMEDID:16128003
Li, XY; Mantovani, R; Hooft van Huijsduijnen, R; Andre, I; Benoist, C; Mathis, D. 1992. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res. 20(5):1087-91 PUBMEDID:1549471