Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica CCAAT Family

Description

Bernadt et al. 2005: NF-Y is a bifunctional transcription factor capable of activating or repressing transcription. NF-Y specifically recognizes CCAAT box motifs present in many eukaryotic promoters. The mechanisms involved in regulating its activity are poorly understood.

Members of this family
  SHOULD possess CBFB_NFYA CBFD_NFYB_HMF CCAAT-Dr1 NF-YB NF-YC domains

Domain alignments

This family is also present in:

References

There are 44 gene models in this family



Gene modelDescriptionDomains
OsIBCD001572 Chr01_2393,1065,,,1,1065, NF-YC CBFD_NFYB_HMF
OsIBCD002418 Chr01_3858,2610,,,1,2610, NF-YC CBFD_NFYB_HMF
OsIBCD003806 Chr01_5849,519,,,1,519, NF-YB CBFD_NFYB_HMF
OsIBCD007829 Chr02_4928,561,,,1,561, NF-YB CBFD_NFYB_HMF
OsIBCD008144 Chr02_5365,903,,,1,903, CBFB_NFYA
OsIBCD009028 Chr03_706,720,,,1,720, CBFB_NFYA
OsIBCD010538 Chr03_2881,999,,,1,999, CBFB_NFYA
OsIBCD011385 Chr03_4465,1071,,,1,1071, CBFB_NFYA
OsIBCD011667 Chr03_4917,972,,,1,972, CBFB_NFYA
OsIBCD011826 Chr03_5162,414,,,1,414, NF-YC Histone
OsIBCD016056 Chr04_5232,663,,,1,663, NF-YB NF-YC CBFD_NFYB_HMF Histone
OsIBCD018294 Chr05_3632,552,,,1,552, NF-YB CBFD_NFYB_HMF
OsIBCD018473 Chr05_3895,873,,,1,873, NF-YC CBFD_NFYB_HMF
OsIBCD018956 Chr05_4606,693,,,1,693, NF-YB CBFD_NFYB_HMF VQ
OsIBCD020186 Chr06_1675,1212,,,1,1212, NF-YB CBFD_NFYB_HMF
OsIBCD022410 Chr07_480,1137,,,1,1137, CBFB_NFYA
OsIBCD023803 Chr07_2962,909,,,1,909, NF-YC CBFD_NFYB_HMF Histone
OsIBCD023804 Chr07_2963,408,,,1,408, NF-YC CBFD_NFYB_HMF Histone
OsIBCD024163 Chr07_3502,894,,,1,894, CBFB_NFYA
OsIBCD025135 Chr08_663,1212,,,1,1212, NF-YB CBFD_NFYB_HMF
OsIBCD025266 Chr08_860,582,,,1,582, CBFB_NFYA
OsIBCD026364 Chr08_2891,795,,,1,795, CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
OsIBCD026573 Chr08_3253,405,,,1,405, NF-YC CBFD_NFYB_HMF Histone
OsIBCD029446 Chr09_3305,504,,,1,504, NF-YB CBFD_NFYB_HMF
OsIBCD033119 Chr11_2576,777,,,1,777, NF-YC CBFD_NFYB_HMF
OsIBCD034796 Chr12_1732,408,,,1,408, NF-YC CBFD_NFYB_HMF Histone
OsIBCD035191 Chr12_2444,417,,,1,417, NF-YC Histone
OsIBCD035650 Chr12_3147,654,,,1,654, CBFB_NFYA
OsIBCD035684 Chr12_3193,936,,,1,936, CBFB_NFYA
OsIBCD035801 Chr01_32,1266,,,1,1266, NF-YC CBFD_NFYB_HMF
OsIBCD037183 Chr01_6750,585,,,1,585, NF-YB CBFD_NFYB_HMF
OsIBCD037184 Chr01_6751,534,,,1,534, NF-YB CBFD_NFYB_HMF
OsIBCD037421 Chr02_737,780,,,1,780, NF-YC CBFD_NFYB_HMF Histone
OsIBCD038210 Chr02_4921,765,,,1,765, NF-YB CBFD_NFYB_HMF
OsIBCD038647 Chr03_1324,741,,,1,741, NF-YC CBFD_NFYB_HMF Histone
OsIBCD038948 Chr03_2903,660,,,1,660, NF-YB CBFD_NFYB_HMF
OsIBCD041013 Chr05_2195,984,,,1,984, NF-YC CBFD_NFYB_HMF
OsIBCD042400 Chr06_4332,753,,,1,753, NF-YC CBFD_NFYB_HMF Histone
OsIBCD043236 Chr07_3488,675,,,1,675, NF-YB CBFD_NFYB_HMF
OsIBCD043578 Chr08_978,750,,,1,750, NF-YC CBFD_NFYB_HMF Histone
OsIBCD043579 Chr08_983,747,,,1,747, NF-YC CBFD_NFYB_HMF Histone
OsIBCD044094 Chr08_3887,618,,,1,618, NF-YC CBFD_NFYB_HMF Histone
OsIBCD044713 Chr09_2556,594,,,1,594, NF-YC CBFD_NFYB_HMF Histone
OsIBCD045061 Chr10_831,1008,,,1,1008, NF-YC CBFD_NFYB_HMF

General references

Bernadt, CT; Nowling, T; Wiebe, MS; Rizzino, A. 2005. NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner. Gene Expr. 12(3):193-212 PUBMEDID:16128003
Li, XY; Mantovani, R; Hooft van Huijsduijnen, R; Andre, I; Benoist, C; Mathis, D. 1992. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res. 20(5):1087-91 PUBMEDID:1549471