Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica CCAAT Family

Description

Bernadt et al. 2005: NF-Y is a bifunctional transcription factor capable of activating or repressing transcription. NF-Y specifically recognizes CCAAT box motifs present in many eukaryotic promoters. The mechanisms involved in regulating its activity are poorly understood.

Members of this family
  SHOULD possess CBFB_NFYA CBFD_NFYB_HMF CCAAT-Dr1 NF-YB NF-YC domains

Domain alignments

This family is also present in:

References

There are 71 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g01290.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os01g08790.1 histone-like transcription factor and archaeal histone, putative NF-YC CBFD_NFYB_HMF
LOC_Os01g24460.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os01g39850.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os01g61810.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os01g61810.2 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os01g61810.3 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os01g70880.1 histone-like transcription factor and archaeal histone, putative NF-YB CBFD_NFYB_HMF
LOC_Os01g70890.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os02g07450.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os02g07450.2 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os02g49370.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os02g49370.2 histone-like transcription factor and archaeal histone, putative, expressed NF-YB
LOC_Os02g49410.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os02g53620.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g07880.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g07880.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g07880.3 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g14669.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os03g14669.2 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os03g29760.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g29760.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g29760.3 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g29970.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os03g44540.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g48970.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g48970.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g48970.3 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g48970.4 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os03g51200.1 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed NF-YC Histone
LOC_Os03g63530.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os03g63530.2 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os04g58680.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YB NF-YC CBFD_NFYB_HMF Histone
LOC_Os05g23910.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os05g38820.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os05g38820.2 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os05g38820.3 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os05g38820.4 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os05g38820.5 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os05g41450.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os05g49780.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os06g17480.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os06g45640.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os07g06470.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os07g06470.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os07g36130.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os07g36140.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os07g41580.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os07g41720.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os07g41720.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os08g07740.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os08g09690.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os08g09690.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os08g10560.1 histone-like transcription factor and archaeal histone family protein NF-YC CBFD_NFYB_HMF Histone Pollen_allerg_1
LOC_Os08g29500.1 histone-like transcription factor and archaeal histone, putative, expressed CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
LOC_Os08g29500.2 histone-like transcription factor and archaeal histone, putative, expressed CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
LOC_Os08g33100.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os08g38780.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os09g30310.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os09g39490.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YB CBFD_NFYB_HMF
LOC_Os10g11580.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os10g25850.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os11g34200.1 histone-like transcription factor and archaeal histone, putative, expressed NF-YC CBFD_NFYB_HMF
LOC_Os12g25120.1 core histone H2A/H2B/H3/H4, putative, expressed NF-YC CBFD_NFYB_HMF Histone
LOC_Os12g34510.1 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed NF-YC Histone
LOC_Os12g41880.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os12g41880.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os12g42400.1 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os12g42400.2 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os12g42400.3 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA
LOC_Os12g42400.4 nuclear transcription factor Y subunit, putative, expressed CBFB_NFYA

General references

Bernadt, CT; Nowling, T; Wiebe, MS; Rizzino, A. 2005. NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner. Gene Expr. 12(3):193-212 PUBMEDID:16128003
Li, XY; Mantovani, R; Hooft van Huijsduijnen, R; Andre, I; Benoist, C; Mathis, D. 1992. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res. 20(5):1087-91 PUBMEDID:1549471