Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor CCAAT Family

Description

Bernadt et al. 2005: NF-Y is a bifunctional transcription factor capable of activating or repressing transcription. NF-Y specifically recognizes CCAAT box motifs present in many eukaryotic promoters. The mechanisms involved in regulating its activity are poorly understood.

Members of this family
  SHOULD possess CBFB_NFYA CBFD_NFYB_HMF CCAAT-Dr1 NF-YB NF-YC domains

Domain alignments

This family is also present in:

References

There are 42 gene models in this family



Gene modelDescriptionDomains
127492 fgenesh1_pm.C_chr_4000795 NF-YB CBFD_NFYB_HMF
144003 estExt_fgenesh1_pm.C_chr_31604 NF-YB CBFD_NFYB_HMF
147912 estExt_fgenesh1_kg.C_chr_20306 NF-YC CBFD_NFYB_HMF Histone
147956 estExt_fgenesh1_kg.C_chr_20350 NF-YB CBFD_NFYB_HMF
148906 estExt_fgenesh1_kg.C_chr_50095 NF-YC CBFD_NFYB_HMF
149760 estExt_fgenesh1_kg.C_chr_90205 NF-YC CBFD_NFYB_HMF
3992609 gw1.10.750.1 NF-YB CBFD_NFYB_HMF
4003026 gw1.7.1571.1 NF-YB CBFD_NFYB_HMF
4003709 gw1.7.1621.1 NF-YC CBFD_NFYB_HMF Histone
4023045 gw1.5.3485.1 NF-YC CBFD_NFYB_HMF
4024311 gw1.10.3936.1 NF-YB CBFD_NFYB_HMF
4132884 gw1.7.14786.1 CCAAT-Dr1 NF-YB CBFD_NFYB_HMF
4143720 gw1.10.15589.1 NF-YC CBFD_NFYB_HMF Histone
4151195 gw1.9.16562.1 NF-YB CBFD_NFYB_HMF VQ
4154139 gw1.4.16647.1 NF-YB CBFD_NFYB_HMF
4779775 e_gw1.1.2828.1 NF-YC Histone
4780248 e_gw1.1.13862.1 NF-YC Histone
4782151 e_gw1.1.14859.1 NF-YB CBFD_NFYB_HMF
4801343 e_gw1.3.20976.1 NF-YB CBFD_NFYB_HMF
4810749 e_gw1.4.17956.1 CBFB_NFYA
4833766 e_gw1.6.17308.1 NF-YC CBFD_NFYB_HMF Histone
4838667 e_gw1.7.1554.1 NF-YC CBFD_NFYB_HMF
4840246 e_gw1.7.17781.1 NF-YC CBFD_NFYB_HMF Histone
4843696 e_gw1.8.2892.1 NF-YC CBFD_NFYB_HMF
4845627 e_gw1.8.13030.1 NF-YC Histone
4847703 e_gw1.8.1611.1 NF-YC
4851841 e_gw1.9.14854.1 NF-YB CBFD_NFYB_HMF
4871592 estExt_Genewise1Plus.C_chr_110346 NF-YC CBFD_NFYB_HMF Histone
4872227 estExt_Genewise1Plus.C_chr_111272 CBFB_NFYA
4964586 fgenesh1_pg.C_chr_1001188 CBFB_NFYA
4969045 fgenesh1_pg.C_chr_2000361 CBFB_NFYA
4971166 fgenesh1_pg.C_chr_2002482 NF-YC CBFD_NFYB_HMF Histone
4973266 fgenesh1_pg.C_chr_3000381 NF-YC CBFD_NFYB_HMF Histone
4990091 fgenesh1_pg.C_chr_8001864 CBFB_NFYA
4997034 estExt_fgenesh1_pg.C_chr_11405 CBFB_NFYA
5000584 estExt_fgenesh1_pg.C_chr_23286 NF-YC CBFD_NFYB_HMF Histone
5007577 estExt_fgenesh1_pg.C_chr_70658 NF-YC CBFD_NFYB_HMF Histone
5029782 Sb01g032710 CBFB_NFYA
5034638 Sb02g038960 CBFB_NFYA
5036878 Sb03g039000 NF-YB CBFD_NFYB_HMF
5047678 Sb01g000900 NF-YC CBFD_NFYB_HMF
5059814 Sb08g021370 CBFB_NFYA

General references

Bernadt, CT; Nowling, T; Wiebe, MS; Rizzino, A. 2005. NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner. Gene Expr. 12(3):193-212 PUBMEDID:16128003
Li, XY; Mantovani, R; Hooft van Huijsduijnen, R; Andre, I; Benoist, C; Mathis, D. 1992. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res. 20(5):1087-91 PUBMEDID:1549471