Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata CSD Family

Description

Karlson & Ryozo. 2003: In this paper, we report the widespread occurrence of the nucleic acid-binding cold shock domain (CSD) in plants and identify the first eukaryotic homologs that are nearly identical to bacterial cold shock proteins (CSP). Using Arabidopsis as a model system, we determined that its four unique CSD genes are differentially regulated in response to low temperature.

Members of this family
  SHOULD possess CSD domain

Domain alignments

This family is also present in:

References

There are 17 gene models in this family



Gene modelDescriptionDomains
336732 fgenesh1_pg.C_scaffold_1003297 CSD
347204 fgenesh1_pg.C_scaffold_5000596 CSD
351768 fgenesh1_pg.C_scaffold_6002361 CSD
359133 fgenesh1_pg.C_scaffold_22000003 CSD
359579 fgenesh1_pg.C_scaffold_408000001 CSD
480687 fgenesh2_kg.3__3388__AT2G17870.1 CSD zf-CCHC
480954 fgenesh2_kg.4__14__AT2G21060.1 CSD zf-CCHC
491032 fgenesh2_kg.7__465__AT4G36020.1 CSD zf-CCHC
858957 Al_scaffold_0007_2456 CSD
873550 Al_scaffold_0003_2191 CSD
875321 Al_scaffold_0003_3962 CSD
876490 Al_scaffold_0002_1084 CSD
877062 Al_scaffold_0002_1656 CSD
879449 Al_scaffold_0001_1216 CSD
880742 Al_scaffold_0001_2509 CSD
900266 scaffold_304236.1 CSD
912317 scaffold_700059.1 CSD zf-CCHC

General references

Coles, LS; Diamond, P; Lambrusco, L; Hunter, J; Burrows, J; Vadas, MA; Goodall, GJ. 2002. A novel mechanism of repression of the vascular endothelial growth factor promoter, by single strand DNA binding cold shock domain (Y-box) proteins in normoxic fibroblasts. Nucleic Acids Res. 30(22):4845-54 PUBMEDID:12433987
Coles, LS; Diamond, P; Occhiodoro, F; Vadas, MA; Shannon, MF. 1996. Cold shock domain proteins repress transcription from the GM-CSF promoter. Nucleic Acids Res. 24(12):2311-7 PUBMEDID:8710501
Karlson, D; Imai, R. 2003. Conservation of the cold shock domain protein family in plants. Plant Physiol. 131(1):12-5 PUBMEDID:12529510
Karlson, D; Nakaminami, K; Toyomasu, T; Imai, R. 2002. A cold-regulated nucleic acid-binding protein of winter wheat shares a domain with bacterial cold shock proteins. J. Biol. Chem. 277(38):35248-56 PUBMEDID:12122010
Nakaminami, K; Karlson, DT; Imai, R. 2006. Functional conservation of cold shock domains in bacteria and higher plants. Proc. Natl. Acad. Sci. U.S.A. 103(26):10122-7 PUBMEDID:16788067