version: 3.0
Coccomyxa sp. C-169 CSD Family
Description
Karlson & Ryozo. 2003: In this paper, we report the widespread occurrence of the nucleic acid-binding cold shock domain (CSD) in plants and identify the first eukaryotic homologs that are nearly identical to bacterial cold shock proteins (CSP). Using Arabidopsis as a model system, we determined that its four unique CSD genes are differentially regulated in response to low temperature.
Members of this familySHOULD possess CSD domain
This family is also present in:
- Micromonas pusilla CCMP1545
- Micromonas sp. RCC299
- Ostreococcus lucimarinus
- Ostreococcus tauri
- Chlamydomonas reinhardtii
- Chlorella sp. NC64A
- Physcomitrella patens
- Selaginella moellendorffii
- Oryza sativa subsp. indica
- Oryza sativa subsp. japonica
- Sorghum bicolor
- Zea mays
- Arabidopsis lyrata
- Arabidopsis thaliana
- Carica papaya
- Populus trichocarpa
- Vitis vinifera
There are 3 gene models in this family
General references
Coles, LS; Diamond, P; Lambrusco, L; Hunter, J; Burrows, J; Vadas, MA; Goodall, GJ. 2002. A novel mechanism of repression of the vascular endothelial growth factor promoter, by single strand DNA binding cold shock domain (Y-box) proteins in normoxic fibroblasts. Nucleic Acids Res. 30(22):4845-54 PUBMEDID:12433987Coles, LS; Diamond, P; Occhiodoro, F; Vadas, MA; Shannon, MF. 1996. Cold shock domain proteins repress transcription from the GM-CSF promoter. Nucleic Acids Res. 24(12):2311-7 PUBMEDID:8710501
Karlson, D; Imai, R. 2003. Conservation of the cold shock domain protein family in plants. Plant Physiol. 131(1):12-5 PUBMEDID:12529510
Karlson, D; Nakaminami, K; Toyomasu, T; Imai, R. 2002. A cold-regulated nucleic acid-binding protein of winter wheat shares a domain with bacterial cold shock proteins. J. Biol. Chem. 277(38):35248-56 PUBMEDID:12122010
Nakaminami, K; Karlson, DT; Imai, R. 2006. Functional conservation of cold shock domains in bacteria and higher plants. Proc. Natl. Acad. Sci. U.S.A. 103(26):10122-7 PUBMEDID:16788067
Design qRT-PCR primers using Quantprime