Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica DDT Family

Description

Doerks et al. 2001: Homology-based sequence analyses have revealed the presence of a novel domain (DDT) in bromodomain PHD finger transcription factors (BPTFs), chromatin remodeling factors of the BAZ-family and other putative nuclear proteins. This domain is characterized by a number of conserved aromatic and charged residues and is predicted to consist of three alpha helices. Recent studies indicate a likely DNA-binding function for the DDT domain.

Members of this family
  SHOULD possess DDT domain
  SHOULD NOT possess Alfin-like Homeobox domains

Domain alignments

This family is also present in:

References

There are 6 gene models in this family



Gene modelDescriptionDomains
OsIBCD002872 Chr01_4526,5034,,,1,5034, DDT
OsIBCD006858 Chr02_3481,1902,,,1,1902, DDT
OsIBCD014419 Chr04_2927,1695,,,1,1695, DDT
OsIBCD018880 Chr05_4489,4224,,,1,4224, DDT
OsIBCD024488 Chr07_3970,5118,,,1,5118, AT_hook DDT PHD
OsIBCD031842 Chr11_370,5628,,,1,5628, DDT PHD

General references

Doerks, T; Copley, R; Bork, P. 2001. DDT -- a novel domain in different transcription and chromosome remodeling factors. Trends Biochem. Sci. 26(3):145-6 PUBMEDID:11246006