Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica DDT Family

Description

Doerks et al. 2001: Homology-based sequence analyses have revealed the presence of a novel domain (DDT) in bromodomain PHD finger transcription factors (BPTFs), chromatin remodeling factors of the BAZ-family and other putative nuclear proteins. This domain is characterized by a number of conserved aromatic and charged residues and is predicted to consist of three alpha helices. Recent studies indicate a likely DNA-binding function for the DDT domain.

Members of this family
  SHOULD possess DDT domain
  SHOULD NOT possess Alfin-like Homeobox domains

Domain alignments

This family is also present in:

References

There are 8 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g48180.1 DDT domain containing protein, putative, expressed DDT
LOC_Os02g35100.1 DDT domain containing protein, putative, expressed DDT WAC_Acf1_DNA_bd
LOC_Os02g35100.2 DDT domain containing protein, putative, expressed DDT WAC_Acf1_DNA_bd
LOC_Os04g35880.1 retrotransposon protein, putative, unclassified, expressed DDT
LOC_Os07g42750.1 DDT domain containing protein, putative, expressed DDT
LOC_Os07g46690.1 PHD-finger family protein, expressed AT_hook DDT PHD
LOC_Os11g05130.1 PHD-finger family protein, expressed DDT PHD
LOC_Os11g05130.2 PHD-finger family protein, expressed DDT PHD

General references

Doerks, T; Copley, R; Bork, P. 2001. DDT -- a novel domain in different transcription and chromosome remodeling factors. Trends Biochem. Sci. 26(3):145-6 PUBMEDID:11246006