Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor DDT Family

Description

Doerks et al. 2001: Homology-based sequence analyses have revealed the presence of a novel domain (DDT) in bromodomain PHD finger transcription factors (BPTFs), chromatin remodeling factors of the BAZ-family and other putative nuclear proteins. This domain is characterized by a number of conserved aromatic and charged residues and is predicted to consist of three alpha helices. Recent studies indicate a likely DNA-binding function for the DDT domain.

Members of this family
  SHOULD possess DDT domain
  SHOULD NOT possess Alfin-like Homeobox domains

Domain alignments

This family is also present in:

References

There are 5 gene models in this family



Gene modelDescriptionDomains
128401 fgenesh1_pm.C_chr_6000153 DDT WAC_Acf1_DNA_bd
144459 estExt_fgenesh1_pm.C_chr_40532 DDT WAC_Acf1_DNA_bd
4817805 e_gw1.5.29.1 DDT PHD
4876784 estExt_Genewise1Plus.C_chr_210945 AT_hook DDT PHD
4988559 fgenesh1_pg.C_chr_8000332 DDT PHD

General references

Doerks, T; Copley, R; Bork, P. 2001. DDT -- a novel domain in different transcription and chromosome remodeling factors. Trends Biochem. Sci. 26(3):145-6 PUBMEDID:11246006