Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica FAR1 Family

Description

Lin et al. 2007: FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.

Members of this family
  SHOULD possess FAR1 domain

Domain alignments

This family is also present in:

References

There are 129 gene models in this family



Gene modelDescriptionDomains
OsIBCD000420 Chr01_651,2172,,,1,2172, FAR1 SWIM
OsIBCD001963 Chr01_3114,885,,,1,885, FAR1
OsIBCD002030 Chr01_3218,1809,,,1,1809, FAR1 SWIM
OsIBCD002624 Chr01_4165,2415,,,1,2415, FAR1
OsIBCD003757 Chr01_5778,2634,,,1,2634, FAR1 SWIM
OsIBCD003955 Chr01_6097,3033,,,1,3033, FAR1 SWIM
OsIBCD004497 Chr01_6858,2991,,,1,2991, FAR1 SWIM
OsIBCD004777 Chr02_96,2334,,,1,2334, FAR1 SWIM
OsIBCD004784 Chr02_105,1914,,,1,1914, FAR1
OsIBCD005164 Chr02_664,2595,,,1,2595, FAR1
OsIBCD005444 Chr02_1056,2166,,,1,2166, FAR1 SWIM
OsIBCD005898 Chr02_1747,3486,,,1,3486, FAR1 SWIM
OsIBCD006263 Chr02_2443,714,,,1,714, FAR1
OsIBCD006627 Chr02_3106,2457,,,1,2457, FAR1 SWIM
OsIBCD006775 Chr02_3349,2529,,,1,2529, FAR1 SWIM
OsIBCD006800 Chr02_3403,1881,,,1,1881, FAR1
OsIBCD007155 Chr02_3927,2631,,,1,2631, FAR1 SWIM
OsIBCD007156 Chr02_3928,2403,,,1,2403, FAR1 SWIM
OsIBCD008964 Chr03_609,3546,,,1,3546, FAR1 Peptidase_C48
OsIBCD009063 Chr03_752,2256,,,1,2256, FAR1 SWIM
OsIBCD009510 Chr03_1363,2097,,,1,2097, FAR1
OsIBCD009989 Chr03_2033,2073,,,1,2073, FAR1 SWIM
OsIBCD010021 Chr03_2075,1125,,,1,1125, FAR1
OsIBCD010034 Chr03_2089,3396,,,1,3396, FAR1 SWIM
OsIBCD010266 Chr03_2426,2589,,,1,2589, FAR1 SWIM
OsIBCD010433 Chr03_2676,1926,,,1,1926, FAR1 SWIM
OsIBCD010908 Chr03_3656,2712,,,1,2712, FAR1 SWIM
OsIBCD011271 Chr03_4298,1794,,,1,1794, FAR1 SWIM
OsIBCD011420 Chr03_4524,3015,,,1,3015, FAR1 SWIM
OsIBCD012137 Chr03_5602,3006,,,1,3006, AT_hook FAR1 SWIM
OsIBCD012588 Chr03_6198,2352,,,1,2352, AT_hook FAR1 SWIM
OsIBCD013665 Chr04_1674,2466,,,1,2466, FAR1
OsIBCD014152 Chr04_2533,2892,,,1,2892, FAR1 SWIM
OsIBCD014171 Chr04_2565,618,,,1,618, FAR1
OsIBCD014314 Chr04_2772,2964,,,1,2964, FAR1 SWIM
OsIBCD014692 Chr04_3307,2757,,,1,2757, FAR1 SWIM
OsIBCD015047 Chr04_3805,2883,,,1,2883, FAR1
OsIBCD015368 Chr04_4285,3339,,,1,3339, FAR1 SWIM
OsIBCD015596 Chr04_4600,2886,,,1,2886, FAR1 SWIM
OsIBCD016277 Chr05_201,3603,,,1,3603, FAR1
OsIBCD016407 Chr05_392,2952,,,1,2952, FAR1 SWIM
OsIBCD016714 Chr05_885,1326,,,1,1326, FAR1
OsIBCD016716 Chr05_887,2706,,,1,2706, FAR1
OsIBCD016732 Chr05_919,1788,,,1,1788, FAR1 SWIM
OsIBCD017129 Chr05_1630,2538,,,1,2538, FAR1
OsIBCD017467 Chr05_2341,2832,,,1,2832, FAR1 SWIM
OsIBCD017733 Chr05_2789,534,,,1,534, FAR1
OsIBCD017735 Chr05_2792,2271,,,1,2271, FAR1 Glyco_hydro_1
OsIBCD018352 Chr05_3731,3510,,,1,3510, FAR1 SWIM
OsIBCD018409 Chr05_3814,3474,,,1,3474, DUF1263 FAR1 SWIM
OsIBCD019536 Chr06_662,2460,,,1,2460, FAR1 SWIM
OsIBCD020008 Chr06_1359,2490,,,1,2490, FAR1 SWIM
OsIBCD020011 Chr06_1363,1620,,,1,1620, FAR1 SWIM
OsIBCD020162 Chr06_1629,1923,,,1,1923, FAR1 SWIM
OsIBCD020328 Chr06_1897,723,,,1,723, FAR1
OsIBCD020568 Chr06_2397,2022,,,1,2022, FAR1
OsIBCD020626 Chr06_2522,1035,,,1,1035, FAR1
OsIBCD020636 Chr06_2541,2145,,,1,2145, FAR1 SWIM
OsIBCD020952 Chr06_3119,2079,,,1,2079, FAR1 SWIM
OsIBCD021099 Chr06_3392,2886,,,1,2886, FAR1 SWIM
OsIBCD021211 Chr06_3560,7029,,,1,7029, FAR1 LRRNT_2 LRR_1 Pkinase Pkinase_Tyr SWIM
OsIBCD021248 Chr06_3610,3447,,,1,3447, FAR1
OsIBCD022318 Chr07_349,1971,,,1,1971, FAR1
OsIBCD023041 Chr07_1613,609,,,1,609, FAR1
OsIBCD023077 Chr07_1692,1746,,,1,1746, FAR1 SWIM
OsIBCD023326 Chr07_2227,2280,,,1,2280, FAR1 SWIM
OsIBCD023514 Chr07_2522,2637,,,1,2637, FAR1 SWIM
OsIBCD023516 Chr07_2525,2661,,,1,2661, FAR1 SWIM
OsIBCD023560 Chr07_2589,2061,,,1,2061, FAR1
OsIBCD023561 Chr07_2590,1872,,,1,1872, FAR1
OsIBCD023729 Chr07_2847,1059,,,1,1059, FAR1
OsIBCD023769 Chr07_2907,2565,,,1,2565, FAR1 SWIM
OsIBCD023901 Chr07_3100,2712,,,1,2712, FAR1 SWIM
OsIBCD024114 Chr07_3437,1512,,,1,1512, FAR1 SWIM
OsIBCD024198 Chr07_3558,2451,,,1,2451, FAR1 GATA SWIM
OsIBCD024505 Chr07_3993,2259,,,1,2259, AT_hook FAR1 SWIM
OsIBCD024966 Chr08_390,1563,,,1,1563, FAR1
OsIBCD025096 Chr08_597,3033,,,1,3033, FAR1 SWIM
OsIBCD025592 Chr08_1438,1251,,,1,1251, FAR1
OsIBCD025918 Chr08_2047,3309,,,1,3309, FAR1 SWIM
OsIBCD025923 Chr08_2055,2706,,,1,2706, FAR1
OsIBCD026259 Chr08_2681,2388,,,1,2388, FAR1 SWIM
OsIBCD026537 Chr08_3195,1383,,,1,1383, FAR1
OsIBCD027751 Chr09_588,1092,,,1,1092, FAR1
OsIBCD027774 Chr09_648,2055,,,1,2055, FAR1
OsIBCD027902 Chr09_916,2370,,,1,2370, FAR1
OsIBCD027967 Chr09_1040,1059,,,1,1059, FAR1
OsIBCD028728 Chr09_2246,1986,,,1,1986, FAR1 SWIM
OsIBCD028837 Chr09_2435,1089,,,1,1089, FAR1
OsIBCD030024 Chr10_954,1485,,,1,1485, FAR1
OsIBCD030165 Chr10_1229,1353,,,1,1353, FAR1
OsIBCD030375 Chr10_1622,2172,,,1,2172, FAR1
OsIBCD030425 Chr10_1701,2184,,,1,2184, FAR1
OsIBCD031133 Chr10_2789,2433,,,1,2433, FAR1 SWIM
OsIBCD031532 Chr10_3367,1530,,,1,1530, FAR1
OsIBCD031680 Chr11_137,1749,,,1,1749, AT_hook FAR1 SWIM
OsIBCD032250 Chr11_1032,3669,,,1,3669, FAR1 Serpin
OsIBCD032297 Chr11_1111,1803,,,1,1803, FAR1 SWIM
OsIBCD032350 Chr11_1195,2199,,,1,2199, FAR1 SWIM
OsIBCD032421 Chr11_1320,1014,,,1,1014, FAR1
OsIBCD032422 Chr11_1321,2382,,,1,2382, FAR1
OsIBCD032526 Chr11_1504,1932,,,1,1932, FAR1
OsIBCD032528 Chr11_1507,810,,,1,810, FAR1
OsIBCD032586 Chr11_1644,2109,,,1,2109, FAR1
OsIBCD033960 Chr12_314,2304,,,1,2304, FAR1 SWIM
OsIBCD034087 Chr12_512,1722,,,1,1722, FAR1
OsIBCD034113 Chr12_559,2454,,,1,2454, FAR1 SWIM
OsIBCD034300 Chr12_835,2541,,,1,2541, FAR1 SWIM
OsIBCD034547 Chr12_1266,1452,,,1,1452, FAR1
OsIBCD034761 Chr12_1659,2919,,,1,2919, FAR1
OsIBCD034791 Chr12_1715,789,,,1,789, FAR1
OsIBCD034804 Chr12_1750,2685,,,1,2685, FAR1
OsIBCD037897 Chr02_3431,2100,,,1,2100, FAR1 SWIM
OsIBCD038512 Chr03_617,1464,,,1,1464, FAR1
OsIBCD038656 Chr03_1360,3024,,,1,3024, FAR1 SWIM
OsIBCD039144 Chr03_3906,1011,,,1,1011, FAR1
OsIBCD039389 Chr03_5132,2358,,,1,2358, FAR1 SWIM
OsIBCD042278 Chr06_3668,2010,,,1,2010, FAR1 SWIM
OsIBCD042478 Chr06_4712,2079,,,1,2079, FAR1 SWIM
OsIBCD043817 Chr08_2468,579,,,1,579, FAR1
OsIBCD044562 Chr09_1864,2067,,,1,2067, FAR1 SWIM
OsIBCD046539 Chr12_1010,2157,,,1,2157, FAR1 SWIM
OsIBCD046963 Chr12_3294,2127,,,1,2127, FAR1 SWIM
OsIBSD047038 Supscaffold501_1,2733,,,1,2733, FAR1
OsIBSD047187 Supscaffold257_1,1704,,,1,1704, FAR1
OsIBSD048167 Supscaffold2003_1,3285,,,1,3285, DUF659 FAR1 hATC zf-C2HC_plant
OsIBSD048281 Supscaffold1094_4,1125,,,1,1125, FAR1
OsIBSD048303 Supscaffold128_6,1446,,,1,1446, FAR1
OsIBSD048694 Supscaffold1035_4,1479,,,1,1479, FAR1

General references

Hudson, M; Ringli, C; Boylan, MT; Quail, PH. 1999. The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. Genes Dev. 13(15):2017-27 PUBMEDID:10444599
Lin, R; Ding, L; Casola, C; Ripoll, DR; Feschotte, C; Wang, H. 2007. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318(5854):1302-5 PUBMEDID:18033885