Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica FAR1 Family

Description

Lin et al. 2007: FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.

Members of this family
  SHOULD possess FAR1 domain

Domain alignments

This family is also present in:

References

There are 138 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g06852.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os01g16660.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os01g16740.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os01g19050.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os01g23840.1 transposon protein, putative, unclassified FAR1
LOC_Os01g32700.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os01g63030.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os01g63380.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os01g71850.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os02g01860.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os02g01950.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os02g10840.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g16140.1 transposon protein, putative, unclassified FAR1
LOC_Os02g16240.1 transposon protein, putative, unclassified FAR1 MULE Peptidase_C48 SWIM
LOC_Os02g18370.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g25470.1 transposon protein, putative, unclassified FAR1
LOC_Os02g26780.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os02g28180.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os02g29640.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os02g31850.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os02g33750.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g33750.2 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g34590.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g39220.1 transposon protein, putative, unclassified Cyclin_C Cyclin_N FAR1 MULE SWIM
LOC_Os02g39520.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g39520.2 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g39540.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g39540.2 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os02g40950.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os02g44790.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os03g06860.1 transposon protein, putative, unclassified, expressed FAR1 MULE
LOC_Os03g08370.1 transposon protein, putative, unclassified, expressed FAR1 GATA MULE SWIM
LOC_Os03g12490.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os03g15010.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os03g15040.1 FAR1 family protein, expressed FAR1
LOC_Os03g15040.2 FAR1 family protein, expressed FAR1
LOC_Os03g21660.1 transposon protein, putative, unclassified, expressed FAR1
LOC_Os03g37920.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os03g40160.1 transposon protein, putative, unclassified FAR1 SWIM
LOC_Os03g41800.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os03g45300.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os03g50900.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os03g56630.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os03g56630.2 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os03g62660.1 transposon protein, putative, unclassified, expressed AT_hook FAR1 MULE SWIM
LOC_Os03g62660.2 transposon protein, putative, unclassified, expressed AT_hook FAR1 MULE SWIM
LOC_Os04g04400.1 FAR1 family protein FAR1 MULE
LOC_Os04g10860.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os04g22990.1 retrotransposon protein, putative, unclassified FAR1 MULE RVT_1 Retrotrans_gag SWIM
LOC_Os04g25100.1 transposon protein, putative, unclassified DUF295 FAR1 MULE SWIM
LOC_Os04g28580.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os04g30870.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os04g34430.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os04g34430.2 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os04g36590.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os04g40060.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os04g44630.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os04g49380.1 transposon protein, putative, unclassified FAR1 SWIM
LOC_Os04g52560.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os04g54880.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os05g03090.1 transposon protein, putative, unclassified FAR1 SWIM
LOC_Os05g03800.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os05g06170.1 FAR1 family protein FAR1
LOC_Os05g10280.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os05g25320.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os05g30310.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os05g30720.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os05g37540.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os05g39480.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os05g39790.1 transposon protein, putative, unclassified FAR1 SWIM
LOC_Os05g40680.1 FAR1 family protein FAR1
LOC_Os06g07010.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os06g07010.2 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os06g13740.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os06g13900.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os06g25610.1 transposon protein, putative, unclassified FAR1
LOC_Os06g28150.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os06g32530.1 transposon protein, putative, unclassified FAR1
LOC_Os06g36970.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os06g39090.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os06g39680.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os06g42420.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os06g42520.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os06g49550.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os07g01270.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os07g18840.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os07g27770.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os07g27800.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os07g31400.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os07g31420.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os07g31420.2 transposon protein, putative, unclassified, expressed FAR1 MULE
LOC_Os07g32110.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os07g37630.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os07g42400.1 transposon protein, putative, unclassified, expressed FAR1 GATA MULE SWIM
LOC_Os07g42400.2 transposon protein, putative, unclassified, expressed FAR1 GATA MULE SWIM
LOC_Os07g46900.1 transposon protein, putative, unclassified, expressed AT_hook FAR1 MULE SWIM
LOC_Os08g14880.1 transposon protein, putative, unclassified, expressed FAR1
LOC_Os08g14880.2 transposon protein, putative, unclassified, expressed FAR1
LOC_Os08g14880.3 transposon protein, putative, unclassified, expressed FAR1
LOC_Os08g14880.4 transposon protein, putative, unclassified, expressed FAR1
LOC_Os08g15510.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os08g16370.1 transposon protein, putative, unclassified, expressed FAR1 MULE
LOC_Os08g20486.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os08g25260.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os08g27740.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os08g32440.1 transposon protein, putative, unclassified, expressed FAR1
LOC_Os08g33270.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os09g01780.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os09g08460.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os09g11390.1 transposon protein, putative, unclassified FAR1
LOC_Os09g11870.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os09g14040.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os09g23230.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os09g25510.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os09g27390.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os10g06860.1 FAR1 family protein FAR1
LOC_Os10g14040.1 transposon protein, putative, unclassified FAR1
LOC_Os10g19270.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FAR1
LOC_Os10g34884.1 RIPER7 - Ripening-related family protein precursor, expressed FAR1 MULE SWIM
LOC_Os10g42160.1 transposon protein, putative, unclassified, expressed FAR1 MULE
LOC_Os11g02964.1 FAR1 family protein FAR1
LOC_Os11g05340.1 transposon protein, putative, unclassified FAR1 IQ MULE
LOC_Os11g11220.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os11g12490.1 transposon protein, putative, unclassified FAR1 MULE SWIM Serpin
LOC_Os11g14020.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os11g15755.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os11g17430.1 retrotransposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os11g19030.1 FAR1 family protein FAR1
LOC_Os11g45530.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os12g03660.1 transposon protein, putative, unclassified FAR1 MULE SWIM
LOC_Os12g05940.1 transposon protein, putative, unclassified FAR1 MULE
LOC_Os12g06380.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os12g12380.1 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os12g12380.2 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os12g12380.3 transposon protein, putative, unclassified, expressed FAR1 MULE SWIM
LOC_Os12g18910.1 transposon protein, putative, unclassified FAR1 SWIM
LOC_Os12g24400.1 transposon protein, putative, unclassified FAR1 SWIM
LOC_Os12g32140.1 transposon protein, putative, unclassified FAR1 MULE SWIM

General references

Hudson, M; Ringli, C; Boylan, MT; Quail, PH. 1999. The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. Genes Dev. 13(15):2017-27 PUBMEDID:10444599
Lin, R; Ding, L; Casola, C; Ripoll, DR; Feschotte, C; Wang, H. 2007. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318(5854):1302-5 PUBMEDID:18033885