Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor FAR1 Family

Description

Lin et al. 2007: FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.

Members of this family
  SHOULD possess FAR1 domain

Domain alignments

This family is also present in:

References

There are 47 gene models in this family



Gene modelDescriptionDomains
3987490 gw1.1.302.1 FAR1
4002510 gw1.2.1389.1 FAR1
4004301 gw1.8.1754.1 FAR1
4024429 gw1.1.3760.1 FAR1
4123917 gw1.9.13971.1 FAR1
4168696 gw1.2.21424.1 FAR1
4781706 e_gw1.1.18326.1 FAR1
4781825 e_gw1.1.8764.1 FAR1
4788399 e_gw1.2.4277.1 FAR1
4791531 e_gw1.2.19440.1 FAR1
4802633 e_gw1.3.15410.1 FAR1
4811174 e_gw1.4.819.1 FAR1
4830010 e_gw1.6.17080.1 FAR1
4845531 e_gw1.8.2300.1 FAR1 MULE SWIM
4848509 e_gw1.8.2957.1 FAR1
4893019 estExt_Genewise1Plus.C_chr_85853 FAR1
4970835 fgenesh1_pg.C_chr_2002151 FAR1
4974529 fgenesh1_pg.C_chr_3001644 FAR1
4974615 fgenesh1_pg.C_chr_3001730 FAR1 SWIM
4979001 fgenesh1_pg.C_chr_4001834 FAR1
4984861 fgenesh1_pg.C_chr_6001748 FAR1
4991661 fgenesh1_pg.C_chr_9001389 FAR1
4992004 fgenesh1_pg.C_chr_9001732 FAR1
4996092 fgenesh1_pg.C_scaffold_1544000001 FAR1
5000084 estExt_fgenesh1_pg.C_chr_22401 FAR1
5007093 estExt_fgenesh1_pg.C_chr_62440 FAR1
5028867 Sb01g017605 FAR1
5029042 Sb01g020255 FAR1
5031336 Sb10g010346 FAR1
5031388 Sb10g010945 FAR1
5031539 Sb10g015111 FAR1
5031741 Sb10g021572 FAR1
5033121 Sb02g009650 FAR1 SWIM
5033583 Sb02g021810 FAR1
5034760 Sb02g041255 FAR1
5037084 Sb03g042985 FAR1
5037120 Sb03g043682 FAR1
5038752 Sb04g027843 FAR1
5039279 Sb04g038323 FAR1
5040426 Sb05g019480 FAR1
5043213 Sb07g005512 FAR1
5044201 Sb07g027935 FAR1
5046610 Sb09g021205 FAR1
5047175 Sb0010s010910 FAR1
5047221 Sb0011s011810 FAR1
5049785 Sb01g040730 FAR1
5054452 Sb03g047180 FAR1

General references

Hudson, M; Ringli, C; Boylan, MT; Quail, PH. 1999. The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. Genes Dev. 13(15):2017-27 PUBMEDID:10444599
Lin, R; Ding, L; Casola, C; Ripoll, DR; Feschotte, C; Wang, H. 2007. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318(5854):1302-5 PUBMEDID:18033885