Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata GRAS Family

Description

Tian et al. 2004: Members of the GRAS gene family encode transcriptional regulators that have diverse functions in plant growth and development such as gibberellin signal transduction, root radial patterning, axillary meristem formation, phytochrome A signal transduction, and gametogenesis.

Members of this family
  SHOULD possess GRAS domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Bolle 2004 for A. thaliana were taken as gold standard.

The gold standard reported 33 members for this family, 32 of which are present in ArabTFDB, giving a PPV of 0.97. One additional member not present in ArabTFDB might be a false negative, giving a Sensitivity of 0.97.

This family is also present in:

References

There are 35 gene models in this family



Gene modelDescriptionDomains
332832 fgenesh1_pm.C_scaffold_8002175 GRAS
338071 fgenesh1_pg.C_scaffold_2000170 GRAS
345506 fgenesh1_pg.C_scaffold_4001848 GRAS
345509 fgenesh1_pg.C_scaffold_4001851 GRAS
348107 fgenesh1_pg.C_scaffold_5001499 GRAS
471680 fgenesh2_kg.1__1634__AT1G14920.1 GRAS
472381 fgenesh2_kg.1__2335__AT1G21450.1 GRAS
474168 fgenesh2_kg.1__4122__AT1G50420.1 GRAS
474191 fgenesh2_kg.1__4145__AT1G50600.1 GRAS
475738 fgenesh2_kg.2__868__AT1G66350.1 GRAS
477591 fgenesh2_kg.3__292__AT3G03450.1 GRAS
478786 fgenesh2_kg.3__1487__AT3G13840.1 GRAS
483651 fgenesh2_kg.4__2711__AT2G45160.1 GRAS
484073 fgenesh2_kg.5__65__AT2G01570.1 GRAS
485412 fgenesh2_kg.5__1404__AT3G50650.1 GRAS
485819 fgenesh2_kg.5__1811__AT3G54220.1 GRAS
486537 fgenesh2_kg.5__2529__AT3G60630.1 GRAS
488615 fgenesh2_kg.6__1749__AT5G17490.1 GRAS
490555 fgenesh2_kg.6__3689__AT4G00150.1 GRAS
490963 fgenesh2_kg.7__396__AT4G36710.1 GRAS
493153 fgenesh2_kg.7__2586__AT4G17230.1 GRAS
493792 fgenesh2_kg.7__3225__AT5G41920.1 GRAS
495319 fgenesh2_kg.8__1135__AT5G52510.1 GRAS
496077 fgenesh2_kg.8__1893__AT5G59450.1 GRAS
496923 fgenesh2_kg.8__2739__AT5G66770.1 GRAS
497317 fgenesh2_kg.205__1__AT5G52510.1 GRAS
878930 Al_scaffold_0001_697 GRAS
880439 Al_scaffold_0001_2206 GRAS
892558 scaffold_105352.1 GRAS
899299 scaffold_303269.1 GRAS
901864 scaffold_401365.1 GRAS
905858 scaffold_501562.1 GRAS
911098 scaffold_603155.1 GRAS
912572 scaffold_700314.1 GRAS
917700 scaffold_801100.1 GRAS

General references

Bolle, C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218(5):683-92 PUBMEDID:14760535
Richards, DE; Peng, J; Harberd, NP. 2000. Plant GRAS and metazoan STATs: one family? Bioessays 22(6):573-7 PUBMEDID:10842311